Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 5.0e-221 770.8 386 100.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.3e-163 577.8 390 74.6
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 5.3e-162 574.7 390 72.8
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 2.6e-161 572.4 389 73.0
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 2.9e-160 568.9 384 73.7
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.8e-160 568.5 389 72.0
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.8e-157 559.7 390 73.6
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 6.7e-157 557.8 391 72.1
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.5e-156 556.6 390 72.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.0e-156 556.2 387 72.4
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.6e-156 555.8 407 69.3
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 5.7e-156 554.7 381 71.1
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 5.7e-156 554.7 390 73.3
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.2e-155 552.7 388 72.2
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.7e-155 552.0 389 72.2
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 3.7e-155 552.0 391 71.1
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.1e-154 550.4 390 70.5
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 1.8e-154 549.7 406 68.5
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 2.4e-154 549.3 390 71.3
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.1e-154 548.5 407 68.3
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 6.9e-154 547.7 407 69.3
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.2e-153 547.0 389 70.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.0e-153 546.2 390 71.0
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-153 545.4 390 70.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 7.7e-153 544.3 391 69.8
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.3e-152 543.5 391 69.3
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.0e-152 541.6 391 69.1
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 5.0e-152 541.6 389 71.5
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 5.0e-152 541.6 404 67.8
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 4.2e-151 538.5 389 68.6
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 4.7e-150 535.0 387 68.0
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 6.1e-150 534.6 390 70.0
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.0e-149 533.9 389 67.9
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.0e-149 533.9 390 68.2
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.8e-149 533.1 367 73.6
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 6.7e-149 531.2 389 70.7
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.0e-148 529.6 389 67.4
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 4.4e-148 528.5 391 69.3
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 9.7e-148 527.3 388 69.6
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 2.2e-147 526.2 388 69.1
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 8.2e-147 524.2 388 69.1
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 8.2e-147 524.2 388 68.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.8e-146 523.1 389 69.2
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.3e-146 521.5 390 68.2
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 7.0e-146 521.2 396 68.2
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 9.1e-146 520.8 370 71.4
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.6e-145 520.0 389 69.2
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 2.0e-145 519.6 392 67.9
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.5e-145 518.8 390 68.2
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 4.5e-145 518.5 362 71.8
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 5.9e-145 518.1 392 66.6
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.7e-144 516.5 390 66.2
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.2e-144 516.2 364 71.2
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 3.8e-144 515.4 386 66.1
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 1.1e-143 513.8 390 67.4
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.1e-143 513.8 390 65.9
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.5e-143 513.5 390 67.4
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.9e-143 513.1 389 66.3
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.5e-143 512.7 390 68.2
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.2e-143 511.9 381 69.0
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 4.2e-143 511.9 388 67.3
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 9.4e-143 510.8 390 65.9
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.2e-142 510.4 388 67.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.1e-142 509.6 412 64.3
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.6e-142 508.8 398 65.1
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 4.7e-142 508.4 387 67.4
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 2.3e-141 506.1 378 67.7
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 4.0e-141 505.4 389 66.3
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 8.8e-141 504.2 355 72.1
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 8.8e-141 504.2 414 63.8
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.3e-140 502.3 389 65.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.4e-140 501.9 387 65.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 4.4e-140 501.9 391 66.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.7e-139 500.0 387 65.1
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.8e-139 499.2 387 64.9
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.8e-138 496.5 376 66.0
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 5.3e-138 495.0 386 64.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.5e-135 486.9 386 62.2
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.5e-135 486.9 387 64.3
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.9e-135 486.5 388 63.7
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.9e-135 486.5 371 66.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 5.5e-135 485.0 387 62.0
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 5.5e-135 485.0 388 63.4
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.2e-134 483.8 367 67.6
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.0e-132 476.5 366 65.3
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.8e-130 469.9 388 62.4
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.8e-130 469.9 388 62.4
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 4.1e-130 468.8 382 65.4
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.2e-129 467.2 350 68.0
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 5.5e-127 458.4 416 58.9
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.4e-125 453.8 423 57.4
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 9.2e-122 441.0 390 59.7
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.1e-119 434.1 352 64.8
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.2e-118 430.6 336 65.2
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 9.2e-114 414.5 375 57.3
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.7e-112 410.2 323 63.8
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 5.8e-108 395.2 263 72.6
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 8.6e-104 381.3 252 73.8
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.3e-103 379.4 342 56.1
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.9e-99 366.3 385 53.0
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 4.9e-99 365.5 304 61.5
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.7e-88 330.5 265 64.9
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.2e-84 317.8 322 54.3
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.4e-84 316.2 267 59.9
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.2e-81 307.8 199 72.9
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.8e-78 296.6 186 74.2
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.4e-74 284.3 163 82.8
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 3.0e-72 276.6 225 64.9
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 3.3e-71 273.1 280 48.9
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 5.8e-68 262.3 194 71.1
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.3e-59 234.6 187 59.9
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 6.5e-59 232.3 177 63.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.1e-56 222.6 130 80.8
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.8e-53 214.2 216 49.5
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 9.4e-50 201.8 186 57.0
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.8e-48 197.6 357 35.3
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 3.1e-45 186.8 111 76.6
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 3.6e-41 173.3 130 64.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 6.7e-40 169.1 127 67.7
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 8.8e-40 168.7 160 56.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 9.7e-39 165.2 132 59.1
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.1e-37 161.8 132 58.3
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 3.3e-31 140.2 198 41.9
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.3e-30 138.3 241 36.5
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.7e-30 137.9 184 46.2
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.2e-27 127.5 138 52.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.5e-26 124.8 84 70.2
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.4e-23 113.2 74 70.3
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.7e-22 110.2 63 81.0
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 8.2e-22 109.0 113 55.8
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.8e-21 107.8 108 50.0
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 7.0e-21 105.9 72 72.2
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.9e-18 97.8 92 58.7
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 8.3e-14 82.4 45 84.4
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 2.4e-13 80.9 67 62.7
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.0e-11 75.5 45 77.8
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 9.8e-07 58.9 34 76.5
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.9e-06 56.6 105 36.2


User provided reference genes

Program Settings