Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 0.0e+00 1575.8 921 100.0
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 5.2e-256 888.3 877 60.5
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.0e-248 862.1 879 58.9
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.7e-246 855.5 881 58.0
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 3.5e-244 849.0 904 59.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.2e-238 829.7 887 58.1
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.4e-237 827.0 832 58.4
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 2.4e-237 826.2 875 60.0
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.1e-229 800.8 911 57.7
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 5.4e-229 798.5 865 56.8
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 2.0e-228 796.6 873 56.7
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.3e-227 793.1 886 60.0
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.8e-225 786.2 881 55.8
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 6.2e-225 785.0 826 58.6
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.8e-224 783.5 868 55.0
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 8.9e-224 781.2 872 57.6
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 3.4e-223 779.2 900 56.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 3.7e-222 775.8 819 61.7
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.1e-221 772.3 873 55.3
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 7.8e-220 768.1 887 55.1
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.1e-218 764.2 896 56.5
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 5.6e-218 761.9 896 55.4
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.2e-217 760.8 892 54.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.1e-216 757.7 840 56.2
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.4e-216 757.3 872 58.0
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.4e-216 757.3 872 58.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 2.3e-216 756.5 893 53.5
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.4e-215 752.7 877 57.1
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.4e-215 752.7 886 55.9
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 4.4e-215 752.3 893 52.6
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 5.8e-215 751.9 886 55.8
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.6e-215 751.5 886 54.7
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 2.2e-214 750.0 875 54.7
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 2.2e-214 750.0 896 52.9
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.8e-214 749.2 758 59.2
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.4e-214 748.0 886 55.5
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.4e-213 745.3 786 57.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 7.1e-213 745.0 876 56.3
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-212 743.8 829 58.6
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 2.1e-212 743.4 775 62.1
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.7e-212 743.0 887 53.9
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.8e-212 741.5 861 54.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 4.3e-210 735.7 922 51.7
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 5.6e-210 735.3 825 55.6
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.1e-209 731.5 840 54.6
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.4e-208 730.7 829 54.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-207 725.3 875 55.2
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 9.9e-207 724.5 876 51.0
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 4.9e-206 722.2 902 52.2
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 8.4e-206 721.5 879 52.1
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.1e-205 721.1 801 58.3
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 5.4e-205 718.8 912 50.5
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.2e-204 717.6 834 56.5
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.3e-203 713.4 819 53.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.1e-202 711.1 868 55.4
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.9e-202 710.3 978 48.7
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 3.3e-202 709.5 831 55.5
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 4.3e-202 709.1 864 55.0
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.6e-202 708.8 823 56.6
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 7.3e-202 708.4 874 52.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.6e-201 707.2 824 54.0
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.8e-201 706.4 861 55.3
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 4.0e-200 702.6 893 50.6
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.1e-197 694.5 949 51.7
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.5e-194 684.1 831 53.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.5e-194 683.3 887 50.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 2.8e-193 679.9 869 54.5
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 2.6e-191 673.3 883 53.7
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 5.8e-191 672.2 891 52.9
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.9e-190 669.8 871 52.4
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.4e-189 666.8 750 57.2
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 7.1e-189 665.2 830 51.6
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.3e-187 661.0 885 52.2
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.1e-185 653.7 867 50.6
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 2.1e-185 653.7 827 53.3
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 2.1e-185 653.7 885 52.1
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.8e-184 650.6 897 48.7
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.6e-180 637.5 835 52.2
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.0e-179 634.8 891 47.0
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 5.1e-179 632.5 893 47.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.5e-178 630.9 891 51.2
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 4.3e-178 629.4 833 51.7
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-177 627.9 925 45.9
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 4.1e-176 622.9 774 52.3
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 2.9e-174 616.7 853 50.3
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 6.1e-172 609.0 846 50.0
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.3e-170 603.2 852 48.8
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 9.7e-170 601.7 847 50.5
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.8e-169 600.1 830 49.9
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 4.8e-169 599.4 827 48.5
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 2.4e-168 597.0 832 50.5
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 9.1e-168 595.1 826 49.4
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 2.6e-167 593.6 822 50.6
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 3.4e-167 593.2 841 48.8
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 4.5e-167 592.8 832 50.2
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 3.8e-166 589.7 827 50.5
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.9e-165 587.4 886 48.5
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 2.5e-165 587.0 871 48.7
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 7.4e-162 575.5 839 49.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 9.7e-162 575.1 842 48.6
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 1.1e-160 571.6 837 47.8
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 6.1e-156 555.8 696 56.3
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 8.0e-156 555.4 892 45.9
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 8.8e-155 552.0 864 44.1
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 8.2e-153 545.4 817 46.0
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 2.3e-147 527.3 827 47.6
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-144 517.3 884 44.5
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 6.5e-142 509.2 441 65.3
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 5.7e-138 496.1 835 42.9
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.2e-132 478.4 869 41.0
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 5.8e-122 443.0 900 40.3
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 3.7e-121 440.3 481 53.2
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.9e-112 411.4 849 39.2
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 2.2e-97 361.3 670 42.1
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.6e-95 353.6 835 38.0
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 6.2e-92 343.2 435 49.7
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 6.6e-86 323.2 590 41.5
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.4e-80 305.4 445 47.2
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 4.2e-80 303.9 410 50.7
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 3.9e-78 297.4 397 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 1.5e-74 285.4 809 35.0
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-74 285.4 431 47.1
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.3e-72 276.2 409 45.7
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.2e-64 251.1 228 57.0
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.3e-54 218.4 898 30.8
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 4.5e-50 204.1 214 57.0
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.5e-48 198.4 183 59.6
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.4e-43 181.8 834 30.0
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.9e-38 164.5 137 61.3
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 5.2e-38 164.1 142 58.5
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 3.7e-36 157.9 622 31.4
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.4e-35 156.0 265 52.1
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 4.2e-32 144.4 629 26.9
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.0e-30 138.3 168 56.5
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 8.8e-30 136.7 251 43.8
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-28 131.0 157 52.2
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-27 129.8 342 35.4
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.4e-27 128.6 101 64.4
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 9.1e-27 126.7 242 36.0
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.2e-23 116.3 96 61.5
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.2e-23 116.3 96 61.5
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.2e-22 110.9 150 47.3
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-18 99.4 518 32.2
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-18 97.1 375 30.9
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-16 91.7 518 31.5
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-14 85.9 158 43.0
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 5.7e-13 80.9 109 45.0
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.7e-12 79.3 118 48.3
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.8e-12 78.6 149 34.9
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.6e-10 72.8 148 35.1
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.6e-10 72.8 148 35.1
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 4.5e-10 71.2 296 27.7
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.5e-10 71.2 147 34.0
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.5e-10 71.2 147 34.0
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.5e-10 71.2 147 34.0
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-09 69.3 173 35.3
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.9e-09 68.2 40 80.0
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 2.5e-08 65.5 43 69.8
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.7e-07 61.2 97 40.2
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 4.7e-07 61.2 43 65.1
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 3.1e-06 58.5 56 53.6
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 3.1e-06 58.5 57 52.6
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 5.2e-06 57.8 45 71.1
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 5.2e-06 57.8 39 71.8
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 6.8e-06 57.4 38 73.7


User provided reference genes

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