Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.2e-138 496.5 249 100.0
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.5e-104 382.5 194 96.9
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 2.6e-77 292.7 174 81.6
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 2.6e-77 292.7 174 80.5
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 3.4e-77 292.4 174 80.5
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 5.8e-77 291.6 174 79.9
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 7.6e-77 291.2 156 85.3
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 9.9e-77 290.8 174 78.7
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 9.9e-77 290.8 174 79.3
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.3e-76 290.4 174 79.9
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.3e-76 290.4 174 80.5
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.7e-76 290.0 174 79.9
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.7e-76 290.0 174 79.9
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 2.2e-76 289.7 174 79.3
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.9e-76 289.3 174 77.6
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 3.8e-76 288.9 174 76.4
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 4.9e-76 288.5 174 78.7
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 6.4e-76 288.1 156 85.9
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 8.4e-76 287.7 174 78.7
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.1e-75 287.3 174 78.7
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.1e-75 287.3 174 77.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.1e-75 287.3 174 75.9
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 1.4e-75 287.0 174 78.2
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.4e-75 287.0 174 75.9
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.4e-75 287.0 174 75.9
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 1.9e-75 286.6 174 76.4
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 2.4e-75 286.2 156 84.0
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.4e-75 286.2 174 78.7
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 3.2e-75 285.8 174 76.4
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.2e-75 285.8 174 75.9
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.1e-75 285.4 174 77.0
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.1e-75 285.4 174 77.0
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 4.1e-75 285.4 174 77.0
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 5.4e-75 285.0 174 76.4
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 7.1e-75 284.6 172 77.9
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 9.2e-75 284.3 174 78.2
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 9.2e-75 284.3 174 75.9
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.2e-74 283.9 174 77.6
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.2e-74 283.9 174 76.4
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.2e-74 283.9 172 77.3
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.2e-74 283.9 174 75.3
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 2.1e-74 283.1 172 77.3
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.1e-74 283.1 172 76.7
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.1e-74 283.1 174 76.4
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 2.7e-74 282.7 172 77.3
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.7e-74 282.7 174 75.9
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.7e-74 282.7 174 75.9
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.7e-74 282.7 174 76.4
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 4.6e-74 282.0 174 75.9
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 4.6e-74 282.0 191 70.7
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 7.8e-74 281.2 174 75.3
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 7.8e-74 281.2 174 75.9
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 7.8e-74 281.2 174 76.4
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.0e-73 280.8 174 75.9
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.0e-73 280.8 174 76.4
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.7e-73 280.0 176 76.7
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.3e-73 279.6 174 75.9
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 3.0e-73 279.3 177 74.6
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 3.0e-73 279.3 176 73.9
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 3.9e-73 278.9 174 75.9
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.9e-73 278.9 174 75.9
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 5.1e-73 278.5 174 73.6
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 6.6e-73 278.1 172 75.6
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 6.6e-73 278.1 156 82.1
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.1e-72 277.3 174 75.3
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.5e-72 276.9 175 74.3
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.5e-72 276.2 175 74.9
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 3.3e-72 275.8 156 82.7
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 5.6e-72 275.0 175 73.1
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 5.6e-72 275.0 174 74.1
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 7.3e-72 274.6 174 74.7
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 7.3e-72 274.6 156 79.5
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 7.3e-72 274.6 174 73.6
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.2e-71 273.9 151 82.8
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.2e-71 273.9 156 80.1
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 3.6e-71 272.3 156 80.8
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.1e-70 270.8 168 79.2
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.8e-70 270.0 176 72.2
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 6.9e-70 268.1 156 78.2
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 6.9e-70 268.1 174 70.7
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.6e-69 266.2 156 78.8
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 2.6e-69 266.2 174 73.0
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 4.4e-69 265.4 176 69.3
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 8.4e-68 261.2 176 71.0
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.4e-67 260.4 156 75.0
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 3.2e-67 259.2 197 63.5
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 7.1e-67 258.1 154 76.6
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.7e-65 253.4 174 69.5
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 9.6e-64 247.7 175 65.1
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.3e-63 247.3 174 66.7
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.1e-63 246.5 176 65.9
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 5.8e-61 238.4 174 65.5
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 2.3e-57 226.5 175 58.3
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 5.1e-57 225.3 140 75.7
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 5.6e-56 221.9 174 58.6
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 9.6e-56 221.1 172 66.9
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 4.8e-55 218.8 135 75.6
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 2.4e-54 216.5 135 74.8
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.2e-52 209.9 178 55.1
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 4.2e-51 205.7 148 66.2
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.6e-50 203.8 118 78.0
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.1e-50 203.4 134 72.4
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 9.6e-48 194.5 153 62.1
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.4e-45 186.0 181 55.2
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.4e-45 186.0 181 55.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.9e-44 183.0 110 75.5
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 6.7e-41 171.8 173 47.4
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 4.5e-37 159.1 191 47.1
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 5.9e-37 158.7 106 70.8
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.9e-36 156.4 115 67.0
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 6.5e-36 155.2 89 79.8
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 6.3e-31 138.7 177 44.1
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 3.1e-30 136.3 156 41.7
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.5e-29 134.0 79 77.2
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 3.4e-29 132.9 175 37.7
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 8.5e-28 128.3 89 65.2
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.4e-22 110.9 65 78.5
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-21 107.8 80 65.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 2.1e-18 97.1 81 63.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 6.7e-17 92.0 54 79.6
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 4.4e-16 89.4 52 78.8
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.7e-15 87.4 54 72.2
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 7.0e-14 82.0 44 81.8
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 5.9e-13 79.0 68 51.5
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.2e-07 60.5 45 68.9
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 3.7e-07 59.7 57 52.6


User provided reference genes

Program Settings