Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 3.1e-229 798.1 402 100.0
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 3.1e-104 382.9 194 96.9
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.2e-76 291.2 156 85.9
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 3.6e-76 289.7 175 76.6
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 7.9e-76 288.5 175 77.7
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.0e-75 288.1 175 78.9
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.0e-75 288.1 175 76.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.3e-75 287.7 175 79.4
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.3e-75 287.7 175 78.3
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.3e-75 287.7 175 76.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.3e-75 287.7 175 76.0
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.8e-75 287.3 175 78.9
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 1.8e-75 287.3 175 78.3
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.8e-75 287.3 175 78.3
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.8e-75 287.3 175 78.3
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 3.0e-75 286.6 156 85.9
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.0e-75 286.6 175 76.0
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 3.0e-75 286.6 175 77.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 3.9e-75 286.2 175 77.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.9e-75 286.2 175 77.7
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 6.7e-75 285.4 175 76.0
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 6.7e-75 285.4 175 76.6
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 6.7e-75 285.4 175 78.3
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 8.7e-75 285.0 175 77.7
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 8.7e-75 285.0 176 75.0
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.1e-74 284.6 175 76.6
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 1.1e-74 284.6 191 71.7
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.1e-74 284.6 175 76.0
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.1e-74 284.6 176 75.0
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 1.1e-74 284.6 175 77.1
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.5e-74 284.3 175 76.6
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.5e-74 284.3 175 76.0
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 1.5e-74 284.3 175 76.0
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 1.5e-74 284.3 175 76.0
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.5e-74 284.3 175 76.6
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.5e-74 284.3 175 76.6
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.5e-74 284.3 176 76.7
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.5e-74 284.3 175 75.4
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 2.5e-74 283.5 175 76.0
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 2.5e-74 283.5 175 77.7
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 2.5e-74 283.5 175 74.9
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 3.3e-74 283.1 156 83.3
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 3.3e-74 283.1 175 76.0
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 4.3e-74 282.7 175 75.4
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 4.3e-74 282.7 175 76.6
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 5.7e-74 282.3 177 76.8
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 5.7e-74 282.3 176 75.0
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.3e-73 281.2 175 76.6
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.6e-73 280.8 175 74.9
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.6e-73 280.8 177 74.6
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.2e-73 280.4 182 72.5
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 2.2e-73 280.4 175 75.4
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 2.8e-73 280.0 178 74.7
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.8e-73 280.0 175 74.9
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.7e-73 279.6 175 74.9
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 3.7e-73 279.6 175 76.0
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.7e-73 279.6 175 76.0
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 6.3e-73 278.9 175 74.9
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.3e-73 278.9 175 75.4
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.1e-72 278.1 175 75.4
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.1e-72 278.1 175 74.9
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.8e-72 277.3 175 74.3
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 2.4e-72 276.9 175 74.9
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 3.1e-72 276.6 175 74.3
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 4.1e-72 276.2 177 75.1
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 5.3e-72 275.8 156 83.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 6.9e-72 275.4 175 73.7
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.9e-72 275.4 175 74.3
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 9.1e-72 275.0 156 81.4
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.5e-71 274.2 176 72.7
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 1.5e-71 274.2 176 73.9
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 3.4e-71 273.1 156 79.5
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 5.9e-71 272.3 175 72.6
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 7.7e-71 271.9 156 80.8
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.7e-70 270.8 156 79.5
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 5.0e-70 269.2 151 81.5
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.4e-69 267.7 168 78.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.9e-69 267.3 156 78.2
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.5e-69 266.9 156 79.5
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.2e-69 266.2 175 69.7
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 9.4e-69 265.0 177 70.1
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 4.6e-68 262.7 157 75.2
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 6.1e-68 262.3 182 67.0
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.4e-67 261.2 175 70.9
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.8e-67 260.8 198 63.6
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.5e-66 257.7 154 77.3
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 4.4e-66 256.1 177 68.9
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 2.8e-65 253.4 175 69.7
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 7.7e-63 245.4 175 64.6
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 7.7e-63 245.4 175 65.7
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.7e-62 244.2 177 65.0
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 8.5e-62 241.9 175 66.3
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 4.8e-57 226.1 176 58.0
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 5.3e-56 222.6 141 74.5
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.2e-55 221.5 175 58.3
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 1.7e-54 217.6 213 56.8
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 8.5e-54 215.3 136 73.5
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 9.4e-53 211.8 136 72.8
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.6e-52 211.1 178 56.2
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.0e-51 206.8 134 74.6
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 9.7e-50 201.8 148 64.9
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.7e-49 201.1 118 77.1
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 2.9e-46 190.3 153 60.8
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 6.1e-44 182.6 181 54.7
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 6.1e-44 182.6 181 54.7
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.3e-43 180.6 111 73.0
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 5.4e-40 169.5 174 46.6
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 2.5e-37 160.6 106 71.7
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 8.0e-36 155.6 183 48.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.3e-35 154.1 115 67.0
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 2.3e-35 154.1 89 79.8
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.9e-30 137.1 158 43.0
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 8.6e-30 135.6 177 43.5
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 5.6e-29 132.9 174 37.9
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 2.1e-28 131.0 90 66.7
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.6e-28 130.2 89 69.7
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 3.9e-22 110.2 80 67.5
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.6e-22 109.0 65 78.5
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-18 98.6 81 64.2
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 5.4e-16 89.7 53 79.2
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.2e-15 88.6 52 76.9
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.3e-14 85.1 53 71.7
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-14 84.3 44 84.1
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.5e-13 81.6 71 52.1
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.7e-07 60.8 57 54.4
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.0e-06 57.4 45 64.4


User provided reference genes

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