Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 9.7e-203 709.9 354 100.0
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 2.0e-139 499.6 317 79.5
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.0e-127 460.7 324 72.8
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.7e-127 459.9 324 72.5
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.7e-127 459.9 326 73.0
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.0e-127 459.1 324 72.5
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 3.0e-127 459.1 303 75.9
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 3.9e-127 458.8 324 72.5
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.1e-126 457.2 256 86.3
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 9.6e-126 454.1 276 80.1
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 2.1e-125 453.0 286 77.3
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 8.1e-125 451.1 324 71.3
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 1.1e-124 450.7 323 71.2
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 2.4e-124 449.5 322 71.1
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 4.0e-124 448.7 284 77.5
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 6.9e-124 448.0 286 77.3
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 2.0e-123 446.4 286 76.9
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 9.9e-123 444.1 327 70.0
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.3e-122 443.7 322 69.3
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 1.1e-121 440.7 265 80.4
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 1.4e-121 440.3 320 70.3
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 1.4e-121 440.3 277 78.0
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.9e-121 439.9 311 72.3
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 2.4e-121 439.5 332 69.0
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 2.4e-121 439.5 323 67.8
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 3.2e-121 439.1 294 74.1
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 4.2e-121 438.7 269 78.8
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 5.4e-121 438.3 270 78.5
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 9.3e-121 437.6 267 79.8
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.2e-120 437.2 263 79.8
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.6e-120 436.8 301 71.8
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 2.7e-120 436.0 267 79.4
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 7.9e-120 434.5 264 79.5
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 1.8e-119 433.3 288 75.7
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 2.3e-119 433.0 263 79.8
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 2.3e-119 433.0 275 77.1
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 2.3e-119 433.0 282 76.2
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 2.3e-119 433.0 327 68.5
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 3.9e-119 432.2 282 75.9
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 3.9e-119 432.2 336 65.8
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 6.7e-119 431.4 278 76.6
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 8.7e-119 431.0 267 79.0
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.3e-118 429.1 332 66.6
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 5.6e-118 428.3 264 80.3
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 5.6e-118 428.3 266 77.4
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 9.6e-118 427.6 277 76.5
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 1.6e-117 426.8 264 78.8
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 8.1e-117 424.5 275 75.6
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.1e-116 424.1 264 78.8
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 1.4e-116 423.7 251 81.7
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 3.1e-116 422.5 262 76.3
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 5.3e-116 421.8 270 76.3
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 1.5e-115 420.2 292 71.6
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 3.4e-115 419.1 253 81.4
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 1.3e-114 417.2 259 79.9
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 2.9e-114 416.0 280 72.9
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 3.8e-114 415.6 260 76.2
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 8.4e-114 414.5 280 73.2
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 1.1e-113 414.1 291 70.1
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.4e-113 413.7 328 67.4
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 1.9e-113 413.3 280 72.5
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 2.4e-113 412.9 270 74.8
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 3.2e-113 412.5 280 72.9
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 5.5e-113 411.8 277 74.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 3.5e-112 409.1 280 72.9
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 7.9e-112 407.9 270 73.7
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 1.8e-111 406.8 264 75.8
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.5e-110 403.7 298 68.1
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 3.3e-110 402.5 308 68.5
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 3.3e-110 402.5 277 72.9
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 1.3e-109 400.6 264 73.9
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 1.6e-109 400.2 273 74.7
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 6.2e-109 398.3 243 79.8
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 6.9e-108 394.8 322 63.7
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 3.0e-103 379.4 223 82.5
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 5.1e-103 378.6 231 78.8
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 1.1e-102 377.5 257 75.5
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 2.6e-99 366.3 270 68.9
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 1.9e-97 360.1 276 67.0
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 1.6e-96 357.1 237 75.9
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 5.1e-95 352.1 263 65.4
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 8.2e-93 344.7 211 78.7
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 1.0e-90 337.8 243 70.4
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 9.4e-89 331.3 271 58.3
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 3.6e-88 329.3 200 79.0
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.4e-83 312.8 275 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 4.8e-77 292.4 223 59.6
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 3.8e-74 282.7 233 58.4
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 1.0e-71 274.6 249 61.4
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 1.0e-71 274.6 249 61.4
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.8e-68 263.8 166 77.1
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 1.6e-64 250.8 153 81.7
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 3.0e-63 246.5 162 75.3
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 3.6e-56 223.0 135 76.3
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 4.7e-56 222.6 250 52.0
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 2.3e-50 203.8 279 42.3
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 2.9e-45 186.8 271 42.1
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 3.9e-42 176.4 144 66.0
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 3.6e-40 169.9 368 32.1
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 2.3e-39 167.2 98 78.6
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 2.0e-38 164.1 109 72.5
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 3.1e-31 140.2 79 78.5
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 1.4e-28 131.3 88 69.3
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.1e-24 117.5 132 52.3
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 7.6e-22 109.0 317 28.1
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.3e-21 108.2 299 30.4
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 6.0e-19 99.4 95 53.7
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 8.7e-18 95.5 106 52.8
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 2.5e-09 67.4 312 25.0
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 7.3e-09 65.9 252 25.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.8e-08 63.9 276 23.9
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 6.2e-08 62.8 45 68.9
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 8.1e-08 62.4 318 25.8
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.1e-07 62.0 347 23.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.8e-07 61.2 256 25.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.8e-07 61.2 252 25.4
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 2.4e-07 60.8 321 24.9
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 3.1e-07 60.5 272 26.5
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 9.0e-07 58.9 369 26.0
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 9.0e-07 58.9 248 25.0
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 9.0e-07 58.9 348 24.4
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 9.0e-07 58.9 306 22.5
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.2e-06 58.5 273 23.8
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.2e-06 58.5 287 23.0
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.2e-06 58.5 340 24.7
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.2e-06 58.5 351 23.4
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.2e-06 58.5 321 22.7
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.5e-06 58.2 254 25.6
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.0e-06 57.8 258 24.4
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 2.0e-06 57.8 302 25.5
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 2.0e-06 57.8 267 23.6
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.0e-06 57.8 273 24.5
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.6e-06 57.4 250 25.2
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 3.4e-06 57.0 308 21.4
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 3.4e-06 57.0 307 24.4
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.5e-06 56.6 271 25.8
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 4.5e-06 56.6 252 24.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 5.8e-06 56.2 268 23.9
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 5.8e-06 56.2 310 21.6
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 5.8e-06 56.2 265 22.6
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 5.8e-06 56.2 280 24.3
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 7.6e-06 55.8 232 25.0
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 7.6e-06 55.8 250 23.2
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 9.9e-06 55.5 289 25.3
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 9.9e-06 55.5 279 23.3


User provided reference genes

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