Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1212.6 623 100.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1173.7 621 96.8
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1162.1 621 96.5
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 620 90.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 616 89.3
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 615 88.1
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1093.6 618 88.3
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1093.2 618 88.3
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1092.8 618 88.2
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 618 88.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 618 88.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1089.3 617 88.8
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 618 88.5
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1086.2 615 88.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 618 88.5
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1084.7 623 88.0
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1083.9 617 86.7
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 618 88.0
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1083.2 614 88.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1083.2 616 88.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1080.5 618 87.4
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 618 86.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1079.3 618 86.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1077.8 619 87.7
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1077.4 618 86.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 4.3e-312 1074.3 616 87.8
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 4.3e-312 1073.9 618 86.1
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.7e-311 1072.0 611 87.2
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.1e-310 1069.3 618 86.1
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.9e-310 1068.5 615 86.7
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 2.5e-310 1068.1 623 86.7
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 5.5e-310 1067.0 616 86.0
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 9.4e-310 1066.2 616 86.2
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.6e-309 1065.4 618 86.1
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 3.6e-309 1064.3 615 85.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 3.6e-309 1064.3 614 88.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.0e-308 1061.2 619 85.9
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 5.1e-308 1060.4 614 87.6
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 6.7e-308 1060.1 616 85.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 6.7e-308 1060.1 614 86.8
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.1e-307 1059.3 640 84.4
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 4.4e-307 1057.4 612 86.3
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 1.3e-306 1055.8 618 85.8
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.2e-306 1055.0 618 86.4
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.8e-306 1053.9 612 85.6
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 4.8e-306 1053.9 614 87.9
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 8.2e-306 1053.1 615 85.2
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.0e-303 1046.2 613 86.0
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 2.2e-303 1045.0 621 85.8
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.2e-302 1040.0 619 85.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 2.7e-301 1038.1 622 84.7
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.8e-300 1035.4 615 85.0
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.8e-300 1035.4 614 83.9
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 5.2e-300 1033.9 614 85.5
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.1e-299 1032.7 614 85.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.7e-299 1029.6 622 83.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 1.1e-297 1026.2 618 84.0
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 1.1e-297 1026.2 618 84.0
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 3.8e-295 1017.7 618 82.4
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 5.0e-295 1017.3 621 82.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.5e-294 1015.8 614 82.4
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 5.5e-294 1013.8 615 83.6
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.7e-293 1011.5 621 81.5
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.6e-293 1011.1 618 83.5
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.7e-290 1002.3 618 81.9
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 6.3e-290 1000.3 616 81.7
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.4e-289 998.4 614 81.3
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-289 998.0 646 79.7
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 7.0e-289 996.9 617 81.5
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 2.7e-288 995.0 612 81.7
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 3.5e-288 994.6 616 81.5
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 3.5e-288 994.6 616 81.8
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 4.5e-288 994.2 616 81.7
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.7e-288 993.4 585 85.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.3e-287 992.6 616 81.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.3e-287 992.6 616 81.5
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 2.2e-287 991.9 616 81.5
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 3.8e-287 991.1 612 82.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 8.5e-287 989.9 612 82.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.1e-286 989.6 623 82.8
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.5e-286 988.4 621 82.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 4.2e-286 987.6 614 81.4
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 5.5e-286 987.3 617 80.4
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.2e-285 986.1 614 81.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.7e-285 984.9 618 81.9
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 1.4e-284 982.6 618 80.3
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 1.8e-284 982.2 614 79.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.2e-283 979.5 614 80.9
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.2e-283 979.5 614 80.9
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.2e-283 979.5 614 80.9
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.0e-283 978.8 616 80.4
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 2.6e-283 978.4 615 80.8
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 5.7e-283 977.2 613 80.6
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-280 969.5 541 89.1
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.0e-276 954.9 638 79.0
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 6.8e-276 953.7 614 79.5
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.6e-275 951.8 625 77.4
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-273 946.4 635 78.4
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.5e-272 941.4 603 78.3
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 6.6e-271 937.2 615 77.9
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.3e-270 934.9 611 77.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 7.3e-270 933.7 617 76.8
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.1e-269 932.2 616 78.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.4e-267 924.5 612 77.0
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.4e-257 892.9 614 76.1
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.4e-251 871.7 611 74.6
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-250 869.4 641 72.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 8.7e-239 830.5 641 70.4
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.6e-238 827.8 479 88.1
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.3e-238 827.4 537 79.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.6e-229 798.5 452 89.6
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.2e-225 785.4 613 67.2
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.1e-223 778.1 616 68.8
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.3e-217 757.3 483 80.1
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 7.9e-208 727.6 435 85.3
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 7.4e-206 721.1 609 63.5
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-196 689.1 556 69.6
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.1e-196 687.6 403 87.6
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 5.9e-195 684.9 608 58.9
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.9e-194 682.6 401 87.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.0e-179 633.3 537 60.7
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 9.8e-166 587.8 591 50.9
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.5e-161 573.2 483 64.4
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-158 563.9 595 50.1
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.4e-157 558.5 399 75.7
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.1e-156 555.8 594 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-135 487.3 588 44.7
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.6e-130 468.8 597 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.4e-127 461.1 599 42.4
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.8e-125 453.0 579 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.4e-110 403.3 399 54.1
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.2e-108 396.4 399 59.6
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.6e-107 394.4 248 82.7
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.0e-103 378.6 221 83.3
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 5.5e-100 369.4 627 38.6
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.8e-72 276.6 233 67.0
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.4e-57 227.3 129 86.0
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.2e-56 224.6 171 73.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.8e-53 213.8 132 71.2
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.6e-30 138.7 78 83.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 8.1e-27 126.3 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 4.4e-25 120.6 63 85.7
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.7e-24 118.6 100 62.0
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.4e-23 114.8 59 88.1
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.1e-15 89.4 56 75.0
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 6.0e-14 83.6 61 70.5
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.8e-09 67.0 48 56.2
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.1e-06 58.5 30 76.7


User provided reference genes

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