Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 8.2e-29 129.8 70 100.0
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.8e-23 112.1 70 90.0
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.8e-23 112.1 70 90.0
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.8e-23 112.1 70 90.0
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 6.7e-23 110.2 70 88.6
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 1.1e-22 109.4 70 88.6
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 1.1e-22 109.4 70 88.6
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.5e-22 109.0 70 88.6
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.5e-22 109.0 70 88.6
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.5e-22 109.0 70 88.6
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 2.0e-22 108.6 70 87.1
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 2.0e-22 108.6 70 87.1
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.6e-22 108.2 70 88.6
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 3.3e-22 107.8 70 84.3
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.4e-22 107.5 70 87.1
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 4.4e-22 107.5 70 87.1
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 85.7
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.4e-22 106.7 70 87.1
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 9.7e-22 106.3 69 85.5
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 9.7e-22 106.3 70 85.7
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 9.7e-22 106.3 70 85.7
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 9.7e-22 106.3 70 87.1
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 2.2e-21 105.1 70 84.3
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 2.2e-21 105.1 70 84.3
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 2.2e-21 105.1 70 84.3
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 2.2e-21 105.1 66 87.9
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 2.2e-21 105.1 70 81.4
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.8e-21 104.0 70 84.3
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-20 102.8 70 84.3
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 1.8e-20 102.1 65 87.7
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 2.4e-20 101.7 65 86.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 2.4e-20 101.7 68 83.8
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 4.1e-20 100.9 65 86.2
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 5.3e-20 100.5 65 86.2
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 9.1e-20 99.8 69 79.7
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.2e-19 99.4 70 81.4
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.5e-19 99.0 70 81.4
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 2.0e-19 98.6 70 80.0
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 5.9e-19 97.1 70 74.3
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.7e-19 96.7 70 80.0
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.0e-18 96.3 68 80.9
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.2e-18 95.1 70 80.0
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 2.9e-18 94.7 62 83.9
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 3.2e-17 91.3 70 70.0
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 9.4e-17 89.7 59 88.1
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 9.4e-17 89.7 59 88.1
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 9.4e-17 89.7 55 89.1
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 2.1e-16 88.6 69 76.8
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 2.1e-16 88.6 69 76.8
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-16 87.0 57 84.2
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 1.8e-15 85.5 53 90.6
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.5e-14 82.4 50 92.0
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.5e-14 82.4 57 80.7
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 2.6e-14 81.6 67 71.6
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 2.6e-14 81.6 67 71.6
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 3.3e-14 81.3 56 80.4
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 3.3e-14 81.3 67 71.6
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 9.7e-14 79.7 48 93.8
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 4.8e-13 77.4 53 81.1
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 4.8e-13 77.4 53 81.1
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 4.1e-12 74.3 54 83.3
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.5e-11 70.9 45 91.1
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.9e-11 70.5 47 85.1
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 5.9e-11 70.5 62 67.7
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 3.6e-08 61.2 40 85.0
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 5.2e-07 57.4 58 67.2
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 7.5e-06 53.5 30 93.3


User provided reference genes

Program Settings