Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00985 Eucalyptus grandis HOM05D003949 ORTHO05D004504 8.3e-70 266.9 135 100.0
Eucgr.A00657 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.4e-61 239.6 144 87.5
Eucgr.E00984 Eucalyptus grandis HOM05D003949 ORTHO05D004504 4.4e-55 218.0 144 81.9
Eucgr.E00983 Eucalyptus grandis HOM05D003949 ORTHO05D004504 2.1e-44 182.6 145 71.0
Eucgr.E00988 Eucalyptus grandis HOM05D003949 ORTHO05D004504 2.7e-44 182.2 145 69.7
Potri.002G077000 Populus trichocarpa HOM05D003949 ORTHO05D004504 1.3e-43 179.9 138 69.6
Manes.18G083500 Manihot esculenta HOM05D003949 ORTHO05D004504 2.3e-43 179.1 138 69.6
Sabra02G0060500 Salix brachista HOM05D003949 ORTHO05D004504 3.0e-43 178.7 138 68.8
Ciclev10002113m.g Citrus clementina HOM05D003949 ORTHO05D004504 2.5e-42 175.6 142 67.6
Atru.chr13.1594 Acer truncatum HOM05D003949 ORTHO05D004504 3.3e-42 175.3 145 66.9
Eucgr.E00993 Eucalyptus grandis HOM05D003949 ORTHO05D004504 3.3e-42 175.3 145 67.6
Gohir.D05G271200 Gossypium hirsutum HOM05D003949 ORTHO05D004504 4.3e-42 174.9 145 66.9
Gorai.009G284100 Gossypium raimondii HOM05D003949 ORTHO05D004504 4.3e-42 174.9 145 66.9
Thecc.08G134300 Theobroma cacao HOM05D003949 ORTHO05D004504 1.2e-41 173.3 145 67.6
Cfa018416 Carpinus fangiana HOM05D003949 ORTHO05D004504 1.6e-41 172.9 145 66.9
Eucgr.L00420 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.6e-41 172.9 144 66.7
Potri.005G183600 Populus trichocarpa HOM05D003949 ORTHO05D004504 1.6e-41 172.9 138 67.4
Haze_17645 Corylus avellana HOM05D003949 ORTHO05D004504 4.7e-41 171.4 145 66.9
Rhsim11G0072500 Rhododendron simsii HOM05D003949 ORTHO05D004504 1.1e-40 170.2 145 63.4
SGA_v2.0_scaffold28G11965 Striga asiatica HOM05D003949 ORTHO05D004504 1.1e-40 170.2 138 66.7
CSS0001496 Camellia sinensis var. sinensis HOM05D003949 ORTHO05D004504 1.8e-40 169.5 138 65.9
Duzib041G0733 Durio zibethinus HOM05D003949 ORTHO05D004504 2.3e-40 169.1 145 65.5
COL.COLO4_36870 Corchorus olitorius HOM05D003949 ORTHO05D004504 4.0e-40 168.3 146 64.4
MELO3C015709.2 Cucumis melo HOM05D003949 ORTHO05D004504 4.0e-40 168.3 146 63.7
Dinv14706 Davidia involucrata HOM05D003949 ORTHO05D004504 5.2e-40 167.9 145 64.1
Dinv27260 Davidia involucrata HOM05D003949 ORTHO05D004504 5.2e-40 167.9 144 63.9
Gohir.A05G269300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 5.2e-40 167.9 138 66.7
CsaV3_7G022150 Cucumis sativus L. HOM05D003949 ORTHO05D004504 6.8e-40 167.5 146 63.7
Duzib093G1312 Durio zibethinus HOM05D003949 ORTHO05D004504 6.8e-40 167.5 145 64.8
Hma1.2p1_1732F.1_g299770 Hydrangea macrophylla HOM05D003949 ORTHO05D004504 8.9e-40 167.2 138 65.2
MD15G1132500 Malus domestica HOM05D003949 ORTHO05D004504 1.2e-39 166.8 145 62.8
Prupe.1G487700 Prunus persica HOM05D003949 ORTHO05D004504 1.5e-39 166.4 138 63.0
QL09p032129 Quercus lobata HOM05D003949 ORTHO05D004504 1.5e-39 166.4 145 64.1
GSVIVG01008796001 Vitis vinifera HOM05D003949 ORTHO05D004504 1.5e-39 166.4 145 63.4
Carub.0006s2698 Capsella rubella HOM05D003949 ORTHO05D004504 2.0e-39 166.0 142 62.7
ClCG09G021850 Citrullus lanatus HOM05D003949 ORTHO05D004504 2.0e-39 166.0 146 62.3
Sed0004108 Sechium edule HOM05D003949 ORTHO05D004504 2.6e-39 165.6 146 63.0
TWI32G1346 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 2.6e-39 165.6 138 63.8
CAN.G215.13 Capsicum annuum HOM05D003949 ORTHO05D004504 3.4e-39 165.2 143 62.9
FAN20G1921 Fragaria x ananassa HOM05D003949 ORTHO05D004504 3.4e-39 165.2 142 62.7
Nitab4.5_0000005g0360 Nicotiana tabacum HOM05D003949 ORTHO05D004504 3.4e-39 165.2 137 65.0
Nitab4.5_0000389g0100 Nicotiana tabacum HOM05D003949 ORTHO05D004504 3.4e-39 165.2 137 65.0
vmacro00872 Vaccinium macrocarpon HOM05D003949 ORTHO05D004504 3.4e-39 165.2 138 64.5
EL10Ac1g01369 Beta vulgaris HOM05D003949 ORTHO05D004504 4.4e-39 164.9 138 64.5
QL09p031595 Quercus lobata HOM05D003949 ORTHO05D004504 4.4e-39 164.9 138 65.2
FvH4_2g28021 Fragaria vesca HOM05D003949 ORTHO05D004504 5.8e-39 164.5 138 63.8
FAN24G2840 Fragaria x ananassa HOM05D003949 ORTHO05D004504 5.8e-39 164.5 138 63.8
Oeu047169.1 Olea europaea HOM05D003949 ORTHO05D004504 5.8e-39 164.5 138 63.8
DCAR_003593 Daucus carota HOM05D003949 ORTHO05D004504 7.6e-39 164.1 145 61.4
Peaxi162Scf00565g00310 Petunia axillaris HOM05D003949 ORTHO05D004504 7.6e-39 164.1 137 64.2
MSTRG.1405 Avicennia marina HOM05D003949 ORTHO05D004504 9.9e-39 163.7 138 63.8
Migut.N03257 Erythranthe guttata HOM05D003949 ORTHO05D004504 9.9e-39 163.7 138 63.0
FAN27G1067 Fragaria x ananassa HOM05D003949 ORTHO05D004504 9.9e-39 163.7 138 63.0
Actinidia29493 Actinidia chinensis HOM05D003949 ORTHO05D004504 1.3e-38 163.3 138 63.0
QL09p032138 Quercus lobata HOM05D003949 ORTHO05D004504 1.3e-38 163.3 145 62.8
Thhalv10028837m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 2.2e-38 162.5 142 62.7
Cpa.g.sc64.155 Carica papaya HOM05D003949 ORTHO05D004504 2.9e-38 162.2 145 62.8
Lj4A674G53 Lonicera japonica HOM05D003949 ORTHO05D004504 3.8e-38 161.8 139 62.6
Sc15g0007490 Simmondsia chinensis HOM05D003949 ORTHO05D004504 6.4e-38 161.0 138 64.5
Sed0003495 Sechium edule HOM05D003949 ORTHO05D004504 8.4e-38 160.6 146 59.6
Sp6g09480 Schrenkiella parvula HOM05D003949 ORTHO05D004504 1.1e-37 160.2 138 63.0
Sopen02g010800 Solanum pennellii HOM05D003949 ORTHO05D004504 1.1e-37 160.2 137 62.8
AT4G08455 Arabidopsis thaliana HOM05D003949 ORTHO05D004504 1.9e-37 159.5 142 62.7
THA.LOC104808256 Tarenaya hassleriana HOM05D003949 ORTHO05D004504 1.9e-37 159.5 138 60.1
FAN15G0925 Fragaria x ananassa HOM05D003949 ORTHO05D004504 2.4e-37 159.1 138 63.0
FAN15G2352 Fragaria x ananassa HOM05D003949 ORTHO05D004504 2.4e-37 159.1 138 63.0
AUR62013445 Chenopodium quinoa HOM05D003949 ORTHO05D004504 3.2e-37 158.7 138 62.3
Lj4C664T4 Lonicera japonica HOM05D003949 ORTHO05D004504 3.2e-37 158.7 139 61.2
AL6G42240 Arabidopsis lyrata HOM05D003949 ORTHO05D004504 5.4e-37 157.9 142 62.0
CARHR259500 Cardamine hirsuta HOM05D003949 ORTHO05D004504 7.1e-37 157.5 138 61.6
Nn1g08941 Nelumbo nucifera HOM05D003949 ORTHO05D004504 7.1e-37 157.5 138 61.6
Cc10_g13590 Coffea canephora HOM05D003949 ORTHO05D004504 9.2e-37 157.1 138 61.6
PGR042G2128 Punica granatum HOM05D003949 ORTHO05D004504 9.2e-37 157.1 138 61.6
Solyc02g032510.3 Solanum lycopersicum HOM05D003949 ORTHO05D004504 9.2e-37 157.1 137 61.3
CiPaw.16G022200 Carya illinoinensis HOM05D003949 ORTHO05D004504 1.6e-36 156.4 139 61.2
AUR62007697 Chenopodium quinoa HOM05D003949 ORTHO05D004504 1.6e-36 156.4 138 61.6
unitig_26.g9909 Utricularia gibba HOM05D003949 ORTHO05D004504 1.6e-36 156.4 138 61.6
ECA248G3438 Erigeron canadensis HOM05D003949 ORTHO05D004504 2.1e-36 156.0 138 60.9
MBI06_g32174_MAGBIO Magnolia biondii HOM05D003949 ORTHO05D004504 2.7e-36 155.6 140 61.4
A03p28040 Brassica napus HOM05D003949 ORTHO05D004504 6.0e-36 154.5 142 59.9
BraA03t12017Z Brassica rapa HOM05D003949 ORTHO05D004504 6.0e-36 154.5 142 59.9
Ah.05g169030 Amaranthus hybridus HOM05D003949 ORTHO05D004504 7.8e-36 154.1 138 60.9
HanXRQChr02g0045541 Helianthus annuus HOM05D003949 ORTHO05D004504 1.3e-35 153.3 142 57.0
BcaC01g04773 Brassica carinata HOM05D003949 ORTHO05D004504 1.7e-35 152.9 142 59.9
BolC3t15703H Brassica oleracea HOM05D003949 ORTHO05D004504 1.7e-35 152.9 142 59.9
Lsat_1_v5_gn_1_7940 Lactuca sativa HOM05D003949 ORTHO05D004504 3.0e-35 152.1 138 58.0
Medtr3g088660 Medicago truncatula HOM05D003949 ORTHO05D004504 3.9e-35 151.8 138 58.0
Eucgr.L00413 Eucalyptus grandis HOM05D003949 ORTHO05D004504 5.1e-35 151.4 121 71.1
Actinidia04780 Actinidia chinensis HOM05D003949 ORTHO05D004504 6.6e-35 151.0 125 64.0
Actinidia33635 Actinidia chinensis HOM05D003949 ORTHO05D004504 6.6e-35 151.0 125 64.0
BcaB01g02864 Brassica carinata HOM05D003949 ORTHO05D004504 1.1e-34 150.2 142 59.2
Ca_16616_v3 Cicer arietinum L. HOM05D003949 ORTHO05D004504 1.1e-34 150.2 138 57.2
TWI34G1744 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 1.1e-34 150.2 145 60.0
unitig_749.g13929 Utricularia gibba HOM05D003949 ORTHO05D004504 1.1e-34 150.2 138 60.1
Aa31LG9G14160 Aethionema arabicum HOM05D003949 ORTHO05D004504 4.3e-34 148.3 138 59.4
Migut.C01075 Erythranthe guttata HOM05D003949 ORTHO05D004504 1.2e-33 146.7 135 58.5
TPR.G6334 Trifolium pratense HOM05D003949 ORTHO05D004504 1.6e-33 146.4 138 56.5
PGR042G1779 Punica granatum HOM05D003949 ORTHO05D004504 2.1e-33 146.0 135 57.8
Prupe.1G488200 Prunus persica HOM05D003949 ORTHO05D004504 2.8e-33 145.6 143 55.9
Eucgr.E00994 Eucalyptus grandis HOM05D003949 ORTHO05D004504 3.6e-33 145.2 127 64.6
PSO528G0283 Papaver somniferum HOM05D003949 ORTHO05D004504 8.1e-33 144.1 139 56.1
CiPaw.15G030200 Carya illinoinensis HOM05D003949 ORTHO05D004504 2.4e-32 142.5 130 63.1
Psat5g084280 Pisum sativum HOM05D003949 ORTHO05D004504 4.0e-32 141.7 138 55.1
Prupe.1G488400 Prunus persica HOM05D003949 ORTHO05D004504 4.0e-32 141.7 139 54.7
PSO170G4419 Papaver somniferum HOM05D003949 ORTHO05D004504 5.2e-32 141.4 141 54.6
Prupe.1G488000 Prunus persica HOM05D003949 ORTHO05D004504 1.2e-31 140.2 135 53.3
Aqoxy117s002 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 2.6e-31 139.0 138 57.2
Aqoxy3G01750 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 2.6e-31 139.0 138 57.2
MD15G1132600 Malus domestica HOM05D003949 ORTHO05D004504 3.4e-31 138.7 139 54.0
Os07g0258700 Oryza sativa ssp. japonica HOM05D003949 ORTHO05D004504 7.6e-31 137.5 138 56.5
Lalb_Chr11g0066221 Lupinus albus HOM05D003949 ORTHO05D004504 1.3e-30 136.7 138 54.3
CDE02G1310 Ceratophyllum demersum HOM05D003949 ORTHO05D004504 2.2e-30 136.0 139 54.0
Prupe.1G487900 Prunus persica HOM05D003949 ORTHO05D004504 1.1e-29 133.7 128 57.8
Prupe.1G488300 Prunus persica HOM05D003949 ORTHO05D004504 1.4e-29 133.3 128 57.8
SEGI_15749 Sequoiadendron giganteum HOM05D003949 ORTHO05D004504 7.1e-29 131.0 144 52.1
Lj1g0017464 Lotus japonicus HOM05D003949 ORTHO05D004504 3.5e-28 128.6 144 50.7
Actinidia03427 Actinidia chinensis HOM05D003949 ORTHO05D004504 7.8e-28 127.5 105 64.8
Prupe.1G488100 Prunus persica HOM05D003949 ORTHO05D004504 1.3e-27 126.7 141 49.6
Glyma.04G244900 Glycine max HOM05D003949 ORTHO05D004504 3.0e-27 125.6 137 48.9
VMungo1309G1661 Vigna mungo HOM05D003949 ORTHO05D004504 3.0e-27 125.6 137 49.6
Duzib116G0071 Durio zibethinus HOM05D003949 ORTHO05D004504 3.9e-27 125.2 136 50.7
Thhalv10016014m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 3.9e-27 125.2 127 53.5
Glyma.06G118200 Glycine max HOM05D003949 ORTHO05D004504 6.6e-27 124.4 137 48.9
Gorai.005G086900 Gossypium raimondii HOM05D003949 ORTHO05D004504 6.6e-27 124.4 121 59.5
Gohir.A02G070300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 1.5e-26 123.2 136 55.1
Gohir.D02G077400 Gossypium hirsutum HOM05D003949 ORTHO05D004504 1.5e-26 123.2 101 69.3
ATR1001G004 Amborella trichopoda HOM05D003949 ORTHO05D004504 1.9e-26 122.9 138 49.3
Phvul.009G130700 Phaseolus vulgaris HOM05D003949 ORTHO05D004504 1.9e-26 122.9 137 48.9
Thhalv10029206m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 6.2e-25 117.9 133 49.6
Sabra05G0139000 Salix brachista HOM05D003949 ORTHO05D004504 1.8e-24 116.3 141 50.4
CANSAT56G1102 Cannabis sativa HOM05D003949 ORTHO05D004504 4.9e-22 108.2 133 49.6
Prupe.1G487800 Prunus persica HOM05D003949 ORTHO05D004504 7.9e-20 100.9 119 50.4
MD15G1132700 Malus domestica HOM05D003949 ORTHO05D004504 1.3e-19 100.1 85 58.8
MD15G1132800 Malus domestica HOM05D003949 ORTHO05D004504 6.7e-19 97.8 84 63.1
Thhalv10023183m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 1.9e-18 96.3 127 42.5
Prupe.2G185900 Prunus persica HOM05D003949 ORTHO05D004504 8.1e-17 90.9 127 43.3
Actinidia28678 Actinidia chinensis HOM05D003949 ORTHO05D004504 2.9e-14 82.4 54 79.6
Actinidia33356 Actinidia chinensis HOM05D003949 ORTHO05D004504 2.9e-14 82.4 54 79.6
Sp6g09470 Schrenkiella parvula HOM05D003949 ORTHO05D004504 6.4e-14 81.3 123 39.0
Prupe.2G186000 Prunus persica HOM05D003949 ORTHO05D004504 8.4e-14 80.9 128 42.2
Eucgr.E00992 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.1e-13 80.5 53 73.6
C03p33900 Brassica napus HOM05D003949 ORTHO05D004504 1.2e-12 77.0 52 76.9
HPP92_003126 Vanilla planifolia HOM05D003949 ORTHO05D004504 1.8e-08 63.2 56 62.5
AagrBONN_evm.TU.Sc2ySwM_344.5251 Anthoceros agrestis HOM05D003949 ORTHO05D004504 3.4e-07 58.9 134 28.4
Oeu045952.1 Olea europaea HOM05D003949 ORTHO05D004504 7.6e-07 57.8 55 56.4
Mapoly0021s0088 Marchantia polymorpha HOM05D003949 ORTHO05D004504 3.8e-06 55.5 135 27.4
BcaB06g28405 Brassica carinata HOM05D002006 ORTHO05D021918 8.4e-06 54.3 127 29.1


User provided reference genes

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