Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00976 Eucalyptus grandis HOM05D003558 ORTHO05D045319 3.2e-53 211.5 105 100.0
Eucgr.E00716 Eucalyptus grandis HOM05D003558 ORTHO05D045319 6.1e-44 180.6 104 84.6
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 6.5e-14 80.9 48 79.2
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 8.5e-14 80.5 48 77.1
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 8.5e-14 80.5 48 81.2
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 8.5e-14 80.5 48 79.2
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 1.1e-13 80.1 48 77.1
CSS0011636 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.5e-13 79.0 55 67.3
CSS0044790 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.5e-13 79.0 55 67.3
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 3.2e-13 78.6 48 75.0
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 4.2e-13 78.2 65 60.0
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.2e-13 77.4 48 77.1
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.2e-13 77.4 48 77.1
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.2e-13 77.4 48 77.1
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.2e-13 77.4 48 77.1
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 7.2e-13 77.4 48 75.0
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 9.5e-13 77.0 48 75.0
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 9.5e-13 77.0 65 56.9
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 1.2e-12 76.6 48 75.0
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 1.2e-12 76.6 47 74.5
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 1.6e-12 76.3 65 55.4
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 1.6e-12 76.3 48 72.9
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.6e-12 76.3 48 75.0
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 1.6e-12 76.3 48 70.8
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.6e-12 76.3 47 76.6
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.6e-12 76.3 47 76.6
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.6e-12 76.3 47 76.6
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 1.6e-12 76.3 48 72.9
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 1.6e-12 76.3 48 72.9
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 1.6e-12 76.3 48 72.9
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.1e-12 75.9 47 78.7
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 2.1e-12 75.9 48 75.0
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 2.1e-12 75.9 48 75.0
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 2.1e-12 75.9 48 75.0
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 2.1e-12 75.9 48 75.0
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 2.1e-12 75.9 48 72.9
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
CSS0039205 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.7e-12 75.5 55 67.3
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 75.0
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 75.0
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 2.7e-12 75.5 48 72.9
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 75.0
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 75.0
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 75.0
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 3.6e-12 75.1 48 72.9
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 4.7e-12 74.7 47 74.5
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 4.7e-12 74.7 48 72.9
CSS0013431 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.1e-12 74.3 49 75.5
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 72.9
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 75.0
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 75.0
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 70.8
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 75.0
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 72.9
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 6.1e-12 74.3 48 75.0
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 8.0e-12 73.9 48 72.9
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 8.0e-12 73.9 48 70.8
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 8.0e-12 73.9 48 72.9
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 8.0e-12 73.9 48 72.9
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 8.0e-12 73.9 48 70.8
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 8.0e-12 73.9 48 72.9
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 1.0e-11 73.6 48 70.8
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.0e-11 73.6 48 75.0
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.0e-11 73.6 48 75.0
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 1.0e-11 73.6 47 72.3
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 1.4e-11 73.2 46 71.7
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 70.8
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 72.9
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 72.9
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 70.8
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 70.8
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 72.9
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 1.4e-11 73.2 47 72.3
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 70.8
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.4e-11 73.2 48 70.8
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 1.8e-11 72.8 48 72.9
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.8e-11 72.8 48 70.8
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 1.8e-11 72.8 48 70.8
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.8e-11 72.8 48 68.8
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 1.8e-11 72.8 48 70.8
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 2.3e-11 72.4 48 70.8
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 2.3e-11 72.4 48 70.8
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 2.3e-11 72.4 48 70.8
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.3e-11 72.4 46 69.6
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 2.3e-11 72.4 48 70.8
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 2.3e-11 72.4 48 70.8
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 3.0e-11 72.0 48 72.9
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 3.0e-11 72.0 48 70.8
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 3.0e-11 72.0 48 72.9
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 3.0e-11 72.0 47 72.3
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 3.0e-11 72.0 48 68.8
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 3.0e-11 72.0 48 68.8
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 5.2e-11 71.2 48 70.8
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 5.2e-11 71.2 48 66.7
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 5.2e-11 71.2 49 65.3
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 5.2e-11 71.2 48 68.8
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 6.8e-11 70.9 49 71.4
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 6.8e-11 70.9 48 68.8
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.8e-11 70.9 48 68.8
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.8e-11 70.9 48 70.8
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.8e-11 70.9 48 70.8
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 6.8e-11 70.9 48 66.7
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 6.8e-11 70.9 45 73.3
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 8.8e-11 70.5 48 68.8
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 8.8e-11 70.5 47 70.2
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 8.8e-11 70.5 48 68.8
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 8.8e-11 70.5 49 69.4
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 8.8e-11 70.5 46 73.9
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 1.2e-10 70.1 47 72.3
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 1.5e-10 69.7 48 68.8
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 1.5e-10 69.7 48 68.8
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 1.5e-10 69.7 48 68.8
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 2.6e-10 68.9 47 70.2
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 3.4e-10 68.6 48 68.8
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 4.4e-10 68.2 48 68.8
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.4e-10 68.2 45 68.9
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 4.4e-10 68.2 48 66.7
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 5.7e-10 67.8 49 65.3
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.7e-09 65.1 42 71.4
CSS0022413 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.4e-08 63.2 38 76.3
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 1.4e-08 63.2 39 71.8
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.0e-08 60.8 39 69.2
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.6e-07 59.7 42 69.0
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.3e-06 56.6 37 70.3
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.3e-06 55.8 31 87.1
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 3.8e-06 55.1 43 53.5


User provided reference genes

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