Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 7.8e-163 577.0 281 100.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.6e-83 312.4 273 61.2
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.3e-82 309.7 271 58.7
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.6e-81 306.2 273 62.3
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.4e-81 305.4 277 61.4
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 7.5e-81 304.7 264 59.8
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.7e-81 304.3 277 61.0
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.8e-79 300.1 271 60.5
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.3e-79 298.5 288 57.3
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.7e-78 296.2 273 59.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.7e-78 296.2 275 57.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.0e-77 294.3 272 58.1
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-77 293.9 271 58.3
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-77 293.9 271 58.3
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-77 293.5 280 57.1
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.7e-77 293.5 277 56.7
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.9e-77 292.7 276 57.2
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 2.9e-77 292.7 278 56.8
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 3.8e-77 292.4 273 59.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 3.8e-77 292.4 273 59.0
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.8e-77 292.4 276 57.2
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.8e-77 292.4 279 57.3
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 5.0e-77 292.0 270 59.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 8.5e-77 291.2 271 58.3
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.5e-76 289.7 269 57.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 5.5e-76 288.5 279 56.6
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-75 287.3 288 56.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.6e-75 287.0 272 57.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.6e-75 287.0 272 57.7
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.6e-75 287.0 273 57.1
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.6e-75 287.0 273 56.8
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.1e-75 286.6 280 55.7
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.1e-75 285.0 266 57.1
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 6.1e-75 285.0 277 55.6
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.0e-75 284.6 280 55.4
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.0e-74 284.3 270 57.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.0e-74 284.3 267 56.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.0e-74 284.3 269 56.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.0e-74 284.3 273 57.1
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 6.8e-74 281.6 252 58.7
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.2e-73 280.8 271 56.5
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.2e-73 280.8 272 57.7
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.5e-73 280.4 271 56.5
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.5e-73 280.4 280 56.1
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 2.0e-73 280.0 270 54.8
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.6e-73 279.6 270 58.1
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 5.7e-73 278.5 275 56.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.8e-72 276.2 288 54.9
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.8e-72 276.2 275 56.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.8e-72 275.4 220 64.1
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 4.8e-72 275.4 271 55.4
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.8e-71 273.5 270 54.1
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.1e-71 272.7 280 55.0
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.4e-71 271.9 278 54.3
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 5.4e-71 271.9 284 53.2
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.0e-71 271.6 283 53.4
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.2e-70 270.8 267 55.4
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.3e-69 267.3 271 53.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.3e-69 266.5 215 65.1
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.9e-69 266.2 218 64.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.9e-69 266.2 255 58.0
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 5.0e-69 265.4 270 54.4
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.1e-68 264.2 266 55.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.9e-68 263.5 273 54.2
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.9e-68 263.5 277 54.2
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.9e-68 263.5 274 52.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.5e-68 263.1 269 55.0
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.5e-68 263.1 272 54.4
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.2e-68 262.7 264 53.8
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.2e-68 262.7 278 53.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 4.2e-68 262.3 219 63.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.5e-68 261.9 313 48.6
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.2e-67 260.8 213 63.4
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.6e-67 260.4 275 53.8
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.6e-67 259.2 268 53.4
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.1e-67 258.5 271 52.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.0e-66 257.7 270 53.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.8e-66 256.9 271 52.0
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.3e-66 256.5 215 61.4
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 2.3e-66 256.5 266 53.8
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.0e-66 256.1 280 51.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.0e-66 256.1 267 52.1
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.0e-66 255.8 209 63.2
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 8.9e-66 254.6 214 61.2
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.2e-65 254.2 209 63.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.0e-65 253.4 284 48.9
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.0e-65 253.4 257 55.6
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 3.4e-65 252.7 269 53.5
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 4.4e-65 252.3 269 50.6
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 9.8e-65 251.1 272 49.6
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 9.8e-65 251.1 267 50.2
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 9.8e-65 251.1 254 54.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-64 250.8 266 52.3
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.3e-64 250.8 272 52.6
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.3e-64 250.8 277 51.6
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 2.8e-64 249.6 278 50.0
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.9e-64 248.8 268 51.9
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 6.3e-64 248.4 215 59.5
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.1e-63 247.7 266 51.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.1e-63 245.7 277 49.5
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.1e-63 245.7 277 49.5
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 5.4e-63 245.4 278 49.3
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 7.0e-63 245.0 212 60.4
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 9.2e-63 244.6 215 59.5
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.6e-62 243.8 213 60.1
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.0e-62 243.4 215 58.6
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.7e-62 243.0 275 50.9
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 7.8e-62 241.5 281 45.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.7e-61 240.4 314 47.8
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.7e-61 240.4 267 49.8
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.7e-61 240.4 217 58.1
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 2.3e-61 240.0 268 50.0
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.9e-61 239.6 298 48.3
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.9e-61 239.6 212 59.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 6.6e-61 238.4 302 48.7
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 8.6e-61 238.0 216 56.9
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.1e-60 237.7 213 58.7
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.6e-60 235.3 305 48.9
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 5.6e-60 235.3 268 47.4
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 7.3e-60 235.0 296 47.6
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.1e-59 231.9 255 52.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-58 230.7 259 49.0
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.0e-58 229.6 219 57.5
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.0e-58 229.6 267 48.7
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 4.0e-58 229.2 279 49.1
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.6e-57 226.5 353 41.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 7.5e-57 224.9 194 62.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.7e-56 223.8 219 54.3
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.7e-56 222.6 197 58.9
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.8e-55 220.3 261 47.1
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 4.1e-55 219.2 221 53.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.2e-55 218.0 223 52.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.0e-54 216.9 213 56.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.5e-54 216.1 225 53.3
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 3.5e-54 216.1 225 53.3
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-53 214.2 222 51.8
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 3.0e-53 213.0 202 54.0
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.0e-53 212.2 201 56.2
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.8e-49 198.7 224 50.9
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 7.5e-49 198.4 265 44.9
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.4e-47 194.1 163 64.4
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.6e-46 189.1 203 52.2
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.0e-45 188.0 174 57.5
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-45 187.6 161 59.6
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-44 184.5 250 45.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-44 184.5 250 45.6
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 9.5e-44 181.4 172 57.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.4e-39 167.5 119 65.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.7e-38 163.3 159 53.5
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.1e-34 149.8 202 42.6
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 2.4e-26 123.6 148 48.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.4e-25 119.8 243 35.4
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 6.0e-22 109.0 109 56.0
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.0e-17 94.0 82 61.0
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 4.5e-17 92.8 136 40.4
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.7e-16 90.9 232 28.4
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.6e-14 84.3 183 35.0
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 6.7e-13 79.0 60 65.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 6.7e-13 79.0 47 68.1


User provided reference genes

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