Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.2e-126 455.7 232 100.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.7e-100 369.0 232 80.6
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 2.3e-80 302.8 235 68.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 5.2e-80 301.6 232 67.2
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.2e-78 296.2 232 66.4
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 4.9e-78 295.0 233 65.7
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.4e-77 293.5 234 66.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 3.2e-77 292.4 231 67.5
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.0e-75 287.3 229 68.1
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.7e-75 286.6 233 67.4
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 3.3e-74 282.3 233 61.8
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 3.3e-74 282.3 230 65.7
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 5.6e-74 281.6 232 62.9
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.1e-73 279.6 233 64.8
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 6.2e-73 278.1 189 73.5
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.8e-72 276.6 236 63.6
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.8e-72 276.6 232 62.5
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.3e-72 276.2 232 64.2
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 5.2e-72 275.0 231 63.2
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 6.8e-72 274.6 238 63.0
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.2e-71 273.9 236 62.3
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.5e-71 273.5 233 60.9
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 3.4e-71 272.3 230 60.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 4.4e-71 271.9 229 62.9
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.8e-71 271.6 229 62.9
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.8e-71 271.6 229 62.9
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 7.5e-71 271.2 226 60.6
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-70 270.4 229 62.4
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.3e-70 270.4 230 61.3
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.2e-70 269.6 231 60.2
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 2.2e-70 269.6 228 62.7
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.9e-70 269.2 224 60.7
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.9e-70 269.2 233 61.8
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 4.9e-70 268.5 234 59.4
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.9e-70 268.5 192 68.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 4.9e-70 268.5 228 59.2
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 6.4e-70 268.1 226 62.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.9e-69 266.5 232 59.5
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.9e-69 266.5 233 57.9
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.4e-69 266.2 233 60.9
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.1e-69 265.4 215 61.9
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 5.4e-69 265.0 198 65.2
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.2e-68 263.8 233 58.4
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.2e-68 263.8 198 64.1
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.6e-68 263.5 227 58.6
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.1e-68 263.1 230 60.9
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.7e-68 262.7 234 57.3
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 3.5e-68 262.3 202 64.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.5e-68 262.3 234 58.5
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.0e-68 261.5 233 56.2
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.0e-67 260.8 230 56.5
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.7e-67 260.0 234 60.3
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.9e-67 258.8 230 55.7
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.9e-66 256.5 232 59.5
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 2.5e-66 256.1 234 58.5
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 5.6e-66 255.0 232 57.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 7.3e-66 254.6 226 58.0
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.7e-65 251.9 233 58.4
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 6.2e-65 251.5 227 59.5
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.6e-63 246.1 222 56.8
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 3.4e-63 245.7 192 64.1
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 4.4e-63 245.4 193 67.9
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 5.8e-63 245.0 230 56.5
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.8e-63 245.0 227 54.6
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.7e-62 243.4 226 54.0
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.9e-62 242.7 243 55.6
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 3.8e-62 242.3 243 55.6
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 4.9e-62 241.9 226 54.9
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 4.9e-62 241.9 255 56.9
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.1e-61 240.7 243 55.1
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.4e-61 239.6 196 58.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 4.1e-61 238.8 188 61.2
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 5.4e-61 238.4 195 57.4
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 5.4e-61 238.4 235 55.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.4e-61 238.4 199 65.3
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 7.1e-61 238.0 227 52.4
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.2e-60 237.3 201 64.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.6e-60 236.9 194 57.7
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 2.1e-60 236.5 195 56.9
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 2.1e-60 236.5 195 56.9
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 2.7e-60 236.1 230 53.5
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 3.5e-60 235.7 242 54.1
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 3.5e-60 235.7 230 53.9
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 4.6e-60 235.3 188 58.5
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 4.6e-60 235.3 235 51.1
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.0e-59 234.2 194 56.2
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.3e-59 233.8 244 52.5
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.3e-59 233.8 227 54.6
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.3e-59 233.8 220 53.6
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 2.3e-59 233.0 194 56.2
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.9e-59 232.3 230 53.5
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 5.1e-59 231.9 188 57.4
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 6.6e-59 231.5 194 55.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.5e-58 230.3 194 55.2
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.6e-58 228.4 227 55.5
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 7.3e-58 228.0 194 55.2
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.6e-57 226.9 233 51.9
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.6e-57 226.9 230 53.0
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.1e-57 226.5 261 50.6
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 2.8e-57 226.1 247 49.8
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 6.2e-57 224.9 228 52.6
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 6.2e-57 224.9 230 52.2
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.1e-56 224.2 229 53.7
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.4e-56 223.8 230 51.7
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.4e-56 223.0 197 56.3
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.0e-56 222.2 187 61.0
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.4e-55 218.8 195 55.9
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 7.6e-55 218.0 196 53.6
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.6e-55 218.0 235 52.8
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 4.9e-54 215.3 226 49.1
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 8.4e-54 214.5 228 53.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.4e-53 213.8 257 47.5
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.9e-53 213.4 228 52.6
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 7.1e-53 211.5 231 51.5
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.4e-48 196.4 184 55.4
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.0e-48 194.5 142 66.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.5e-47 193.7 184 54.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.4e-47 192.6 161 59.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 7.6e-47 191.4 173 53.8
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.9e-46 189.5 196 50.5
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 5.4e-45 185.3 123 74.0
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.8e-43 180.3 233 45.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.3e-43 179.9 149 63.1
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 7.4e-42 174.9 231 45.0
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.8e-41 172.2 234 43.2
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-37 161.0 234 42.7
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 1.6e-36 157.1 253 39.1
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.7e-33 146.0 138 55.8
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.0e-31 140.2 152 48.7
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 3.4e-31 139.4 220 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.1e-28 130.2 183 40.4
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 5.1e-27 125.6 184 39.7
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.2e-25 120.2 143 47.6
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 4.8e-25 119.0 223 35.4
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 4.8e-25 119.0 179 40.2
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.2e-22 110.2 116 50.0
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.9e-21 107.1 76 72.4
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 6.3e-17 92.0 88 54.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.0e-15 87.0 99 46.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.7e-12 76.6 70 51.4
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 1.0e-11 74.7 177 31.6
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 2.6e-07 60.1 54 59.3
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 7.7e-07 58.5 139 30.9
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.2e-06 57.0 98 35.7


User provided reference genes

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