Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 1.6e-92 342.8 186 100.0
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 9.7e-53 210.7 138 79.7
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 1.3e-52 210.3 141 78.7
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 2.2e-52 209.5 147 76.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 6.3e-52 208.0 147 75.5
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.8e-51 206.5 126 82.5
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 7.0e-51 204.5 140 77.9
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 7.0e-51 204.5 134 79.9
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 9.1e-51 204.1 134 79.1
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.7e-49 199.9 149 71.8
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 2.2e-49 199.5 145 74.5
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 2.9e-49 199.1 130 78.5
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 3.8e-49 198.7 138 73.9
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 5.0e-49 198.4 140 75.0
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 6.5e-49 198.0 133 76.7
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 8.5e-49 197.6 123 82.9
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 8.5e-49 197.6 173 63.0
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 1.1e-48 197.2 125 80.0
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 1.4e-48 196.8 154 72.1
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.4e-48 196.8 138 78.3
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 1.4e-48 196.8 156 69.2
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.9e-48 196.4 140 75.7
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.9e-48 196.4 121 81.8
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.9e-48 196.4 135 77.0
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.9e-48 196.4 120 83.3
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 2.5e-48 196.1 161 67.1
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 3.2e-48 195.7 135 77.0
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 3.2e-48 195.7 124 82.3
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 4.2e-48 195.3 173 63.6
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 5.5e-48 194.9 122 81.1
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 5.5e-48 194.9 135 75.6
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 5.5e-48 194.9 122 82.0
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 7.2e-48 194.5 121 81.0
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 7.2e-48 194.5 124 81.5
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 7.2e-48 194.5 138 74.6
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 7.2e-48 194.5 134 77.6
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 7.2e-48 194.5 128 80.5
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 9.4e-48 194.1 133 77.4
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 9.4e-48 194.1 175 64.0
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 9.4e-48 194.1 138 73.9
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.2e-47 193.7 146 74.0
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.6e-47 193.4 128 79.7
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 2.1e-47 193.0 128 79.7
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.1e-47 193.0 136 72.8
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 2.1e-47 193.0 123 78.9
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 2.7e-47 192.6 121 80.2
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 2.7e-47 192.6 128 77.3
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 2.7e-47 192.6 141 73.8
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 4.7e-47 191.8 137 73.0
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 6.1e-47 191.4 151 69.5
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 8.0e-47 191.0 140 70.7
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.0e-46 190.7 160 63.1
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.4e-46 190.3 134 75.4
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 1.8e-46 189.9 122 77.9
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.8e-46 189.9 138 73.2
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.8e-46 189.9 126 78.6
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 2.3e-46 189.5 143 70.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.3e-46 189.5 118 80.5
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 3.0e-46 189.1 109 84.4
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.9e-46 188.7 131 76.3
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 6.7e-46 188.0 109 84.4
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 6.7e-46 188.0 175 61.7
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.1e-45 187.2 185 60.5
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 2.0e-45 186.4 137 71.5
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 2.0e-45 186.4 128 75.8
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 2.0e-45 186.4 128 75.0
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 2.6e-45 186.0 134 73.9
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 5.7e-45 184.9 167 61.7
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.2e-44 183.0 134 73.1
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 3.7e-44 182.2 121 76.9
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 3.7e-44 182.2 143 69.9
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 1.4e-43 180.3 172 62.2
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.8e-43 179.9 180 60.6
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 2.4e-43 179.5 155 67.7
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 9.1e-43 177.6 144 67.4
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 9.1e-43 177.6 135 67.4
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.2e-42 177.2 135 67.4
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.2e-42 177.2 121 76.0
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.6e-42 176.8 146 67.8
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.6e-42 176.8 146 67.8
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 4.5e-42 175.3 129 74.4
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 5.9e-42 174.9 129 74.4
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 7.7e-42 174.5 150 66.7
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.3e-41 173.7 104 82.7
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 2.9e-41 172.6 125 75.2
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 3.8e-41 172.2 135 71.1
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 5.0e-41 171.8 112 78.6
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 8.5e-41 171.0 119 75.6
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.1e-40 170.6 142 67.6
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.5e-40 170.2 136 69.9
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.5e-40 170.2 136 69.9
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.5e-40 170.2 141 65.2
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.2e-40 169.1 132 68.9
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 4.2e-40 168.7 131 71.0
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.5e-40 168.3 142 66.9
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 7.2e-40 167.9 109 77.1
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 7.2e-40 167.9 128 71.1
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 1.2e-39 167.2 166 57.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.2e-39 167.2 110 76.4
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 4.7e-39 165.2 119 71.4
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.7e-36 156.8 106 71.7
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 1.1e-35 154.1 139 65.5
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 9.1e-35 151.0 148 60.1
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 3.8e-33 145.6 116 69.8
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 8.5e-33 144.4 135 63.0
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.2e-32 142.5 153 56.2
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 8.8e-30 134.4 88 77.3
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.0e-25 120.9 84 72.6
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.9e-25 119.4 80 76.2
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.1e-24 117.5 89 69.7
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 5.5e-24 115.2 76 73.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.0e-22 110.9 72 77.8
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.0e-22 110.9 62 83.9
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.8e-22 110.2 82 70.7
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.8e-22 110.2 72 79.2
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 4.0e-22 109.0 71 77.5
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 5.2e-22 108.6 111 55.0
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 7.5e-21 104.8 75 70.7
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 7.5e-21 104.8 119 56.3
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.8e-19 100.1 87 64.4
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.6e-18 97.1 89 60.7
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 3.5e-18 95.9 73 67.1
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.3e-17 93.2 109 51.4
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.9e-17 92.8 126 50.0
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 4.3e-16 89.0 61 73.8
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.1e-15 86.7 103 47.6
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.4e-14 84.0 48 89.6
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.8e-14 83.6 69 66.7
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 1.2e-10 70.9 78 55.1
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.6e-07 60.5 89 46.1
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 2.1e-07 60.1 85 45.9


User provided reference genes

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