Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00527 Eucalyptus grandis HOM05D002977 ORTHO05D003225 3.5e-86 321.6 165 100.0
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 3.5e-30 135.6 163 49.1
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.3e-29 133.7 170 47.1
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.9e-29 132.1 164 47.0
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 6.6e-29 131.3 169 46.2
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 1.1e-28 130.6 170 48.2
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 3.3e-28 129.0 171 45.6
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 1.1e-26 124.0 170 45.3
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 3.4e-25 119.0 169 42.0
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.2e-24 116.3 163 44.8
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 4.9e-24 115.2 163 44.2
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 6.4e-24 114.8 163 44.8
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 8.4e-24 114.4 170 41.2
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 4.2e-23 112.1 167 43.1
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 7.1e-23 111.3 171 40.9
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 7.1e-23 111.3 166 39.8
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 9.3e-23 110.9 163 44.2
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 2.1e-22 109.8 164 37.8
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 2.1e-22 109.8 152 42.1
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 7.9e-22 107.8 164 43.3
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.8e-21 106.7 166 41.6
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.3e-21 106.3 129 44.2
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 3.0e-21 105.9 162 38.3
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 5.1e-21 105.1 154 41.6
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.1e-20 104.0 162 37.7
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 2.5e-20 102.8 165 39.4
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 5.6e-20 101.7 168 36.9
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 7.4e-20 101.3 175 41.1
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 7.4e-20 101.3 129 42.6
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 1.3e-19 100.5 165 39.4
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.3e-19 100.5 158 39.2
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 3.6e-19 99.0 166 42.2
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 6.2e-19 98.2 163 37.4
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.4e-18 97.1 164 36.0
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 2.4e-18 96.3 174 37.4
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.2e-17 94.0 140 40.7
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.2e-17 94.0 164 36.0
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.5e-17 93.6 170 41.2
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 3.4e-17 92.4 161 36.0
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 4.5e-17 92.0 165 36.4
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 4.5e-17 92.0 110 47.3
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 5.8e-17 91.7 170 36.5
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 5.8e-17 91.7 166 38.6
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 7.6e-17 91.3 162 36.4
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 1.7e-16 90.1 166 33.7
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 2.9e-16 89.4 141 43.3
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 3.8e-16 89.0 165 36.4
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 8.4e-16 87.8 171 35.7
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 1.1e-15 87.4 175 35.4
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.4e-15 87.0 173 34.7
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.9e-15 86.7 174 37.9
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 1.9e-15 86.7 167 33.5
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 1.9e-15 86.7 161 35.4
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 2.4e-15 86.3 169 35.5
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 2.4e-15 86.3 160 34.4
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 4.2e-15 85.5 173 37.0
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 4.2e-15 85.5 130 38.5
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 5.5e-15 85.1 124 40.3
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 7.1e-15 84.7 133 41.4
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 1.6e-14 83.6 161 34.8
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.6e-14 83.6 150 39.3
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 2.1e-14 83.2 127 42.5
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 3.5e-14 82.4 164 36.0
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 6.0e-14 81.6 106 41.5
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.0e-13 80.9 129 34.9
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.0e-13 80.9 67 52.2
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.8e-13 80.1 98 45.9
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.3e-13 79.7 107 43.0
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.3e-13 79.7 107 43.0
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 2.3e-13 79.7 168 35.1
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 6.7e-13 78.2 102 37.3
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 6.7e-13 78.2 102 37.3
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.1e-12 77.4 130 39.2
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.5e-12 77.0 127 38.6
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.5e-12 77.0 163 34.4
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.5e-12 77.0 167 30.5
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.5e-12 77.0 173 33.5
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.5e-12 77.0 167 30.5
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 1.5e-12 77.0 72 48.6
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 2.5e-12 76.3 149 36.2
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 4.3e-12 75.5 127 40.9
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 7.4e-12 74.7 134 35.8
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 9.6e-12 74.3 135 34.8
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 1.6e-11 73.6 127 38.6
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 2.8e-11 72.8 137 38.7
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 2.8e-11 72.8 132 35.6
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.8e-11 72.0 126 34.9
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 4.8e-11 72.0 123 38.2
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 6.2e-11 71.6 168 30.4
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 6.2e-11 71.6 110 34.5
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 8.1e-11 71.2 127 38.6
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 8.1e-11 71.2 166 32.5
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 8.1e-11 71.2 126 38.1
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 1.1e-10 70.9 135 31.9
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.4e-10 70.5 123 38.2
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 1.4e-10 70.5 167 28.7
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 1.8e-10 70.1 135 36.3
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 2.4e-10 69.7 127 37.0
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.4e-10 69.7 166 28.9
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 3.1e-10 69.3 154 31.8
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 3.1e-10 69.3 132 34.8
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 4.0e-10 68.9 139 29.5
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 9.0e-10 67.8 130 36.2
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 9.0e-10 67.8 138 38.4
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.2e-09 67.4 99 38.4
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 1.2e-09 67.4 167 28.1
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.5e-09 67.0 127 33.9
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.5e-09 67.0 136 33.8
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.6e-09 66.2 178 29.8
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.6e-09 66.2 123 36.6
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 3.4e-09 65.9 143 36.4
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 4.5e-09 65.5 129 34.1
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 4.5e-09 65.5 112 32.1
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 4.5e-09 65.5 100 35.0
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 7.6e-09 64.7 127 35.4
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 7.6e-09 64.7 124 30.6
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.0e-08 64.3 88 40.9
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.0e-08 64.3 138 31.9
Glyma.01G215900 Glycine max HOM05D002977 ORTHO05D003225 1.0e-08 64.3 172 29.1
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.0e-08 64.3 137 35.8
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.0e-08 64.3 137 35.8
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.3e-08 63.9 131 36.6
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 1.3e-08 63.9 122 34.4
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.7e-08 63.5 99 37.4
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 2.2e-08 63.2 134 30.6
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.2e-08 63.2 137 35.0
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 2.2e-08 63.2 135 31.9
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 3.8e-08 62.4 136 31.6
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 4.9e-08 62.0 138 29.7
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 8.4e-08 61.2 125 26.4
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.1e-07 60.8 102 32.4
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 1.1e-07 60.8 108 34.3
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.1e-07 60.8 145 32.4
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 7.1e-07 58.2 153 31.4
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 7.1e-07 58.2 163 32.5
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 9.3e-07 57.8 100 37.0
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 1.2e-06 57.4 126 29.4
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 1.2e-06 57.4 109 36.7
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 3.5e-06 55.8 126 28.6
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 4.6e-06 55.5 44 54.5
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 6.0e-06 55.1 132 31.8
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.0e-06 55.1 150 30.7


User provided reference genes

Program Settings