Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.1e-180 635.6 322 100.0
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 2.4e-123 446.0 305 74.1
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.9e-120 436.4 307 71.3
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.9e-120 436.4 307 71.3
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.2e-119 433.7 299 74.6
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 3.9e-118 428.7 275 76.0
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 5.1e-118 428.3 304 71.1
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.9e-117 426.4 290 75.5
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.3e-117 425.6 278 78.1
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.6e-116 423.3 265 77.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 6.3e-116 421.4 272 76.5
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 8.2e-116 421.0 262 76.7
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.8e-115 419.9 311 70.7
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.1e-115 419.1 297 72.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.1e-115 419.1 282 72.7
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 9.0e-115 417.5 265 75.8
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.2e-114 417.2 300 70.7
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.0e-114 416.4 277 74.7
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.6e-114 416.0 270 75.6
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.6e-114 416.0 307 69.7
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.6e-114 416.0 275 73.5
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.0e-113 414.1 289 70.6
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 1.0e-113 414.1 298 71.1
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.7e-113 413.3 303 70.6
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.8e-113 412.1 275 73.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 5.0e-113 411.8 265 75.5
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 6.5e-113 411.4 271 75.3
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 6.5e-113 411.4 271 74.9
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 6.5e-113 411.4 259 78.0
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 6.5e-113 411.4 271 74.9
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.1e-112 410.6 270 74.8
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.9e-112 409.8 295 69.8
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.9e-112 409.8 274 73.7
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.9e-112 409.8 273 72.9
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 2.5e-112 409.5 271 73.8
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.5e-112 409.5 275 74.2
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 2.5e-112 409.5 286 73.4
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.2e-112 409.1 276 73.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 3.2e-112 409.1 275 74.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 3.2e-112 409.1 276 72.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 5.5e-112 408.3 271 73.8
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 5.5e-112 408.3 270 73.3
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 5.5e-112 408.3 273 74.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 7.2e-112 407.9 263 75.7
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 2.1e-111 406.4 263 73.4
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.7e-111 406.0 320 66.9
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 6.1e-111 404.8 317 67.2
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-110 404.1 334 65.0
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.4e-110 403.7 262 75.2
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.3e-110 402.9 296 67.9
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.3e-110 402.9 265 74.0
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.0e-110 402.5 271 73.4
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 3.9e-110 402.1 271 73.1
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 3.9e-110 402.1 262 75.2
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 5.1e-110 401.7 274 72.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 6.7e-110 401.4 262 74.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 8.8e-110 401.0 263 75.3
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 8.8e-110 401.0 270 73.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 8.8e-110 401.0 294 70.4
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.1e-109 400.6 281 71.9
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-109 400.6 271 71.6
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 4.3e-109 398.7 275 73.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 5.7e-109 398.3 283 69.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 5.7e-109 398.3 271 72.7
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 9.7e-109 397.5 278 72.3
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-108 397.1 275 72.4
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.3e-108 397.1 275 72.4
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.3e-108 397.1 279 71.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.7e-108 396.7 276 72.1
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.1e-107 392.5 264 73.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 5.3e-107 391.7 261 73.6
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 5.3e-107 391.7 267 72.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 5.9e-106 388.3 286 68.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-105 387.5 312 65.1
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-105 387.5 312 65.1
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 2.9e-105 386.0 317 62.1
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-104 381.3 238 79.4
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.0e-102 377.5 328 60.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.9e-102 375.6 231 78.8
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 5.1e-102 375.2 289 67.1
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 6.7e-102 374.8 254 69.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.5e-101 373.6 277 65.7
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 2.0e-101 373.2 346 58.1
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 4.4e-101 372.1 231 77.1
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 4.8e-100 368.6 293 62.5
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-99 367.5 265 67.5
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.1e-99 367.5 298 65.1
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.4e-99 367.1 231 77.1
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.4e-99 366.3 275 65.5
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 7.0e-99 364.8 278 66.5
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 9.1e-99 364.4 262 67.6
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.0e-98 363.2 270 65.9
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 7.7e-98 361.3 231 75.3
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.9e-97 359.4 375 53.3
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 3.6e-95 352.4 270 66.7
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.8e-94 350.1 263 68.1
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.7e-87 326.2 276 63.8
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 3.6e-87 325.9 251 61.0
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.3e-86 323.2 194 78.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.8e-86 321.2 237 69.2
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 5.7e-85 318.5 278 56.5
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.5e-80 303.1 247 66.8
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 5.5e-80 302.0 250 58.8
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 6.8e-78 295.0 190 76.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.8e-73 279.3 221 66.5
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.2e-71 274.2 213 68.1
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.5e-69 267.3 197 62.4
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 4.4e-69 265.8 213 65.3
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 7.0e-67 258.5 173 75.7
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-63 247.3 159 77.4
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 3.6e-63 246.1 182 72.5
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 6.2e-63 245.4 207 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 4.3e-56 222.6 196 56.1
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.5e-56 221.5 171 67.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-54 218.0 171 66.1
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.2e-54 215.7 129 80.6
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-50 204.5 228 51.3
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-45 186.8 157 65.0
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 7.6e-45 185.3 156 65.4
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.3e-44 184.5 122 67.2
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-44 184.5 157 65.0
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-44 184.5 157 64.3
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-44 183.0 173 60.1
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-44 182.6 157 65.6
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.4e-44 181.8 168 60.7
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-43 180.6 157 63.7
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 7.8e-42 175.3 158 62.0
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.1e-39 167.2 108 77.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 8.1e-39 165.2 175 57.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-38 163.7 146 63.0
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.0e-37 160.6 98 78.6
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-36 156.4 157 58.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.4e-35 154.5 99 75.8
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-33 147.5 94 79.8
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-33 145.6 97 76.3
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-33 145.6 160 55.0
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-33 145.6 160 55.0
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-32 143.3 123 65.0
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-32 142.9 122 64.8
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.4e-30 137.9 339 34.2
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 9.0e-30 135.2 88 68.2
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-24 116.7 109 60.6
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-23 114.0 142 50.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.2e-23 112.5 74 66.2
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-21 106.7 70 78.6
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-20 103.2 133 47.4
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.5e-16 90.5 57 75.4
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-16 89.7 98 54.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 9.6e-16 88.6 56 76.8
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-14 84.0 89 55.1
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 9.6e-08 62.0 111 37.8
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.6e-07 61.2 150 34.0
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 1.4e-06 58.2 34 70.6
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 6.9e-06 55.8 38 65.8


User provided reference genes

Program Settings