Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 4.1e-56 221.1 107 100.0
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.5e-23 111.7 92 64.1
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 7.9e-23 110.5 93 63.4
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.3e-22 109.8 96 62.5
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.7e-22 107.5 90 58.9
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-21 105.9 96 60.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.9e-21 105.9 94 62.8
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.3e-21 105.1 97 56.7
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 7.4e-21 104.0 96 59.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 7.4e-21 104.0 96 59.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-20 103.2 96 61.5
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.7e-20 101.7 95 62.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.8e-20 101.3 97 55.7
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-20 101.3 96 60.4
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.4e-19 99.8 91 58.2
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.8e-19 99.4 96 57.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.1e-19 98.6 96 59.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 4.0e-19 98.2 94 55.3
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.3e-19 97.8 91 57.1
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 6.9e-19 97.4 94 54.3
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.2e-18 96.7 95 53.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.2e-18 96.7 98 54.1
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.5e-18 96.3 88 59.1
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.6e-18 95.5 92 58.7
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 2.6e-18 95.5 92 55.4
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.6e-18 95.5 97 56.7
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.8e-18 94.4 93 54.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 9.9e-18 93.6 94 56.4
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.3e-17 93.2 97 54.6
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.7e-17 92.8 95 57.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.2e-17 92.4 97 54.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.2e-17 92.4 94 53.2
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.2e-17 92.4 93 52.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.9e-17 92.0 93 54.8
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.8e-17 91.7 94 53.2
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 6.4e-17 90.9 91 51.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.4e-17 90.5 93 52.7
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.1e-16 90.1 95 51.6
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-16 90.1 96 54.2
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.4e-16 89.7 91 53.8
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.4e-16 89.0 92 55.4
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.2e-16 88.6 96 56.2
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.5e-16 87.8 97 51.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.2e-15 86.7 96 53.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.6e-15 86.3 90 55.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.3e-14 83.2 86 55.8
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.9e-14 81.6 82 53.7
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 5.1e-14 81.3 89 53.9
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 6.7e-14 80.9 98 46.9
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.7e-14 80.9 98 50.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.1e-13 80.1 89 51.7
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.9e-13 79.3 91 51.6
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.6e-13 77.8 94 55.3
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 7.4e-13 77.4 74 60.8
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 7.4e-13 77.4 90 50.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 9.6e-13 77.0 105 44.8
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 9.6e-13 77.0 106 47.2
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.1e-12 75.9 94 51.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-12 75.9 93 47.3
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 2.1e-12 75.9 91 45.1
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.7e-12 75.1 101 49.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.7e-12 75.1 70 60.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.7e-12 75.1 101 45.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.7e-12 75.1 89 52.8
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.2e-12 74.3 94 46.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.2e-12 73.9 94 50.0
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 8.2e-12 73.9 97 50.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.1e-11 73.6 94 46.8
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 94 46.8
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 94 46.8
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.4e-11 73.2 106 45.3
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.8e-11 72.8 116 43.1
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.8e-11 72.8 95 51.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.1e-11 72.0 67 59.7
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.3e-11 71.2 105 43.8
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 5.3e-11 71.2 116 42.2
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.3e-11 71.2 92 47.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.2e-10 70.1 89 50.6
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.2e-10 70.1 71 57.7
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.5e-10 69.7 99 42.4
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.5e-10 69.7 94 51.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.0e-10 69.3 102 44.1
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.0e-10 69.3 71 56.3
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 4.5e-10 68.2 97 42.3
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.5e-10 68.2 111 41.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.0e-09 67.0 94 45.7
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.9e-09 65.5 86 45.3
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.8e-09 65.1 64 56.2
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-09 65.1 86 48.8
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.8e-09 65.1 107 42.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.8e-09 65.1 83 47.0
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.9e-09 64.7 77 51.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 8.4e-09 63.9 66 53.0
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 8.4e-09 63.9 94 41.5
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 8.4e-09 63.9 52 59.6
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.4e-08 63.2 83 48.2
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.4e-08 63.2 62 54.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 63 54.0
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 63 54.0
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 63 54.0
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.9e-08 62.8 41 73.2
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 96 43.8
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 51.6
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 51.6
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 51.6
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 51.6
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 51.6
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 54.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 2.5e-08 62.4 99 42.4
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 54.7
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.5e-08 62.4 87 42.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 4.2e-08 61.6 67 52.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.2e-08 61.6 83 45.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 5.5e-08 61.2 64 56.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 5.5e-08 61.2 102 40.2
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.5e-08 61.2 100 41.0
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 7.1e-08 60.8 64 51.6
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 7.1e-08 60.8 64 51.6
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.3e-08 60.5 104 43.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 9.3e-08 60.5 105 41.0
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.1 64 51.6
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 85 43.5
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.6e-07 59.7 90 44.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 52.4
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 50.8
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 54.0
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 50.8
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 50.8
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.7e-07 58.9 66 56.1
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.5e-07 58.5 64 53.1
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 71 46.5
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 60 56.7
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 4.6e-07 58.2 102 38.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 6.0e-07 57.8 74 51.4
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 6.0e-07 57.8 100 40.0
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.0e-06 57.0 51 52.9
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.0e-06 57.0 54 53.7
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.0e-06 57.0 48 60.4
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 2.3e-06 55.8 80 45.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.0e-06 55.5 101 39.6
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.0e-06 55.5 54 53.7
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 3.0e-06 55.5 54 53.7
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 3.9e-06 55.1 51 54.9
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 103 39.8
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-06 54.7 87 42.5
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 5.1e-06 54.7 75 41.3
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 6.7e-06 54.3 64 51.6
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 6.7e-06 54.3 56 51.8
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.7e-06 54.3 73 45.2
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.7e-06 53.9 97 40.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 8.7e-06 53.9 98 40.8
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 8.7e-06 53.9 96 37.5


User provided reference genes

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