Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.5e-68 262.7 126 100.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.7e-64 248.1 126 93.7
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.9e-64 247.7 126 94.4
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.9e-64 247.7 126 94.4
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 8.3e-64 246.9 126 92.9
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.4e-63 246.1 126 93.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 2.4e-63 245.4 126 92.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.1e-63 245.0 126 90.5
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.1e-63 244.6 126 91.3
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.4e-63 244.2 126 90.5
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 5.4e-63 244.2 126 92.1
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.4e-63 244.2 126 90.5
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.4e-63 244.2 126 91.3
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 7.0e-63 243.8 125 93.6
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 7.0e-63 243.8 126 93.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 91.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 1.2e-62 243.0 126 90.5
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 92.9
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 91.3
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 92.1
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 89.7
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 92.1
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.5e-62 241.1 124 91.1
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 89.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 90.5
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 90.5
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 90.5
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.9e-62 240.7 126 90.5
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.7e-62 240.4 125 89.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 90.5
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.0e-61 240.0 126 92.1
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.3e-61 239.6 125 89.6
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 91.3
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.3e-61 239.6 127 92.1
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 91.3
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.7e-61 239.2 126 91.3
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 90.5
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.7e-61 239.2 127 91.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 90.5
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 90.5
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 90.5
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 91.3
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.9e-61 238.4 126 90.5
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 90.5
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 91.3
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 3.8e-61 238.0 126 90.5
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 90.5
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.9
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 88.9
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 90.5
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 90.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 89.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 88.9
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 5.0e-61 237.7 125 88.8
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 88.9
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.6e-61 237.3 126 89.7
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 89.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 88.9
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 89.7
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 6.6e-61 237.3 127 90.6
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 88.9
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 88.1
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 89.7
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 8.6e-61 236.9 125 88.0
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 8.6e-61 236.9 125 88.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 90.5
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.1e-60 236.5 124 89.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 90.5
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 3.3e-60 235.0 126 89.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.3e-60 235.0 125 88.0
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 87.3
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.6e-60 234.2 127 89.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 89.7
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 87.3
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 89.7
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 7.2e-60 233.8 140 81.4
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 88.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 88.9
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 89.7
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 87.3
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.8e-59 231.9 124 87.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 86.5
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 88.9
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 88.9
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 4.7e-59 231.1 126 86.5
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 88.1
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 88.1
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 87.3
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.0e-58 229.9 125 88.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.4e-58 229.6 127 89.0
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 88.0
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.8e-58 229.2 126 85.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 85.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 82.5
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 86.5
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 86.5
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 84.9
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 81.7
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 82.5
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.7
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.6e-54 216.1 114 87.7
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 4.6e-54 214.5 124 82.3
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 8.6e-53 210.3 107 94.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.6e-53 210.3 112 89.3
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.5e-52 209.5 107 93.5
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 3.3e-52 208.4 107 92.5
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.6e-51 206.1 107 91.6
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.6e-51 206.1 107 91.6
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.1e-51 205.7 126 77.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 2.8e-51 205.3 126 75.4
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 4.7e-51 204.5 126 77.8
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.3e-50 202.2 107 89.7
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.3e-50 202.2 107 89.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 3.1e-50 201.8 107 89.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 6.8e-50 200.7 112 87.5
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.0e-49 199.1 94 94.7
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.6e-49 198.7 107 90.7
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 86.9
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 7.5e-49 197.2 112 85.7
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.7e-48 194.9 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.4e-48 194.1 93 93.5
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 6.4e-48 194.1 112 82.1
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 3.2e-47 191.8 107 83.2
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 3.2e-47 191.8 126 71.4
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 5.4e-47 191.0 94 91.5
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 7.0e-47 190.7 104 86.5
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.2e-46 189.9 139 70.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.7e-40 169.5 122 64.8
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.1e-39 164.9 124 67.7
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.5e-38 161.8 126 66.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 1.3e-37 159.8 126 66.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 8.6e-37 157.1 141 58.9
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 7.3e-36 154.1 75 90.7
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.1e-35 152.5 101 66.3
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 7.1e-31 137.5 115 57.4
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.2e-31 137.1 79 78.5
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.5e-30 135.2 75 88.0
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.1e-28 130.2 79 78.5
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.2e-27 126.7 91 60.4
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.4e-26 123.2 126 54.0
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-25 120.2 65 84.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.5e-25 119.8 86 70.9
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 4.4e-25 118.2 66 81.8
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.9e-24 115.5 86 67.4
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 2.4e-23 112.5 88 69.3
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 3.2e-23 112.1 63 84.1
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 4.2e-23 111.7 75 70.7
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 5.6e-20 101.3 97 56.7
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-18 95.1 75 68.0
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-18 95.1 72 68.1
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 5.3e-18 94.7 79 54.4
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 5.8e-17 91.3 119 46.2
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.7e-14 82.4 43 88.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 7.6e-09 64.3 45 71.1
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 7.6e-09 64.3 42 78.6


User provided reference genes

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