Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 5.8e-276 953.7 531 100.0
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.5e-47 193.7 339 39.2
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 3.3e-45 187.2 357 38.9
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 2.2e-41 174.5 372 35.8
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 8.6e-38 162.5 299 38.8
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.2e-36 158.7 282 37.6
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 4.7e-36 156.8 350 33.1
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.8e-35 154.8 339 33.0
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.8e-35 154.8 339 33.0
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 9.0e-35 152.5 345 35.9
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 7.6e-34 149.4 244 37.7
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 9.9e-34 149.1 275 36.7
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 2.2e-33 147.9 317 35.6
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 4.9e-33 146.7 294 35.7
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 8.4e-33 146.0 313 33.9
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.1e-32 145.6 313 36.1
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 5.4e-32 143.3 315 34.9
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 9.3e-32 142.5 329 36.2
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 9.3e-32 142.5 359 34.0
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.6e-31 141.7 392 32.4
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 1.6e-31 141.7 369 32.5
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 2.1e-31 141.4 252 39.7
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.1e-31 141.4 231 36.8
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 2.1e-31 141.4 216 38.9
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 2.7e-31 141.0 321 33.0
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 2.7e-31 141.0 356 33.7
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 3.5e-31 140.6 289 37.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 3.5e-31 140.6 305 35.1
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 3.5e-31 140.6 290 35.5
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.5e-31 140.6 305 33.8
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 6.0e-31 139.8 310 35.2
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 1.3e-30 138.7 354 33.1
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.7e-30 138.3 342 35.1
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.3e-30 137.9 294 34.4
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 3.0e-30 137.5 323 34.4
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 3.0e-30 137.5 301 35.2
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.9e-30 137.1 336 34.5
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 3.9e-30 137.1 247 36.0
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.7e-30 136.0 344 34.3
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.7e-30 136.0 332 35.2
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.1e-29 135.6 328 35.1
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 3.3e-29 134.0 282 34.4
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.6e-29 133.3 348 34.2
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 9.6e-29 132.5 298 34.6
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 3.6e-28 130.6 252 38.5
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 4.8e-28 130.2 361 32.4
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 4.8e-28 130.2 353 33.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 4.8e-28 130.2 379 29.6
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 4.8e-28 130.2 332 30.4
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.1e-27 129.0 235 36.2
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 1.8e-27 128.3 338 32.0
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.6e-26 124.4 249 32.5
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.4e-25 119.4 329 30.4
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-24 119.0 331 29.9
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 1.1e-24 119.0 359 30.1
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.1e-24 119.0 296 33.1
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.9e-24 118.2 226 32.7
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.9e-24 118.2 334 29.6
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-23 114.8 316 31.0
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.7e-23 114.4 287 30.7
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.7e-23 114.4 334 29.0
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.7e-23 114.4 219 37.0
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 7.9e-23 112.8 294 31.6
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 1.1e-21 109.0 233 31.3
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 2.5e-21 107.8 272 32.4
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 1.3e-20 105.5 299 31.4
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.6e-20 105.1 307 30.9
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 2.1e-20 104.8 255 29.4
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.7e-20 104.0 120 43.3
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 6.2e-20 103.2 208 32.2
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 6.2e-20 103.2 205 34.6
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 3.1e-19 100.9 342 29.2
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 4.0e-19 100.5 296 28.0
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 5.3e-19 100.1 235 30.6
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 5.3e-19 100.1 258 32.2
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 5.3e-19 100.1 323 28.2
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 4.5e-18 97.1 296 28.7
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 5.8e-18 96.7 374 28.9
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 9.9e-18 95.9 353 28.0
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 2.2e-17 94.7 297 28.3
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.2e-17 94.7 246 30.5
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.9e-17 94.4 331 29.3
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 2.9e-17 94.4 308 28.6
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.9e-16 91.7 200 32.5
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 3.2e-16 90.9 268 29.9
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 9.3e-16 89.4 230 30.9
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.2e-15 89.0 240 30.4
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.1e-15 88.2 335 26.9
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-15 88.2 205 32.2
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-15 88.2 205 32.2
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 3.5e-15 87.4 243 32.1
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 3.5e-15 87.4 141 39.0
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 4.6e-15 87.0 230 30.4
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 6.0e-15 86.7 389 28.0
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 1.3e-14 85.5 137 39.4
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 2.3e-14 84.7 117 41.0
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 2.3e-14 84.7 148 37.2
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 6.7e-14 83.2 421 26.1
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.1e-13 82.4 279 28.3
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.5e-13 82.0 338 27.5
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 3.3e-13 80.9 275 27.3
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.3e-12 79.0 332 27.1
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 1.6e-12 78.6 293 30.4
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 8.2e-12 76.3 286 28.7
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.1e-11 75.9 315 27.0
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.1e-11 75.9 347 26.2
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 1.4e-11 75.5 371 27.5
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.8e-11 75.1 311 27.3
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 3.1e-11 74.3 258 26.4
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 5.3e-11 73.6 334 27.8
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 6.9e-11 73.2 128 40.6
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 4.5e-10 70.5 197 27.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 7.6e-10 69.7 50 52.0
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.7e-09 68.6 252 29.0
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.7e-09 68.6 325 25.5
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 3.8e-09 67.4 184 27.7
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 4.9e-09 67.0 184 27.7
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 2.5e-08 64.7 224 27.7
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.5e-08 64.7 180 25.6
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 3.2e-08 64.3 180 27.2
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.2e-08 63.9 192 28.1
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 4.2e-08 63.9 188 27.1
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 4.2e-08 63.9 216 27.3
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.5e-08 63.5 178 27.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 5.5e-08 63.5 196 27.6
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 7.1e-08 63.2 193 26.4
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 7.1e-08 63.2 208 26.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.3e-08 62.8 179 26.3
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.2e-07 62.4 223 25.1
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.2e-07 62.4 238 25.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.6e-07 62.0 193 29.5
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.6e-07 62.0 252 25.0
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 1.6e-07 62.0 223 27.4
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.6e-07 62.0 180 27.8
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 2.1e-07 61.6 227 27.8
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 2.7e-07 61.2 181 28.2
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 4.6e-07 60.5 184 27.2
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 4.6e-07 60.5 235 25.1
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 6.0e-07 60.1 189 26.5
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 6.0e-07 60.1 188 27.7
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.0e-06 59.3 182 29.7
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.3e-06 58.9 205 26.8
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.8e-06 58.5 177 25.4
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.3e-06 58.2 183 27.3
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.3e-06 58.2 178 27.0
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.3e-06 58.2 202 27.2
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 3.0e-06 57.8 202 27.2
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 3.0e-06 57.8 227 27.3
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 3.0e-06 57.8 180 26.7
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.9e-06 57.4 36 55.6
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.9e-06 57.4 192 26.6
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 3.9e-06 57.4 178 25.3
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.1e-06 57.0 188 29.3
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 6.7e-06 56.6 278 25.9
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 6.7e-06 56.6 249 24.9
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 6.7e-06 56.6 189 24.9
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.7e-06 56.6 42 50.0
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 8.7e-06 56.2 196 27.0
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 8.7e-06 56.2 209 24.9


User provided reference genes

Program Settings