Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 5.5e-57 224.2 120 100.0
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 8.5e-18 94.0 91 58.2
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 4.7e-16 88.2 90 55.6
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.0e-15 87.0 92 55.4
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 3.0e-15 85.5 89 58.4
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 3.0e-15 85.5 98 56.1
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 4.0e-15 85.1 94 51.1
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.5e-14 83.2 89 56.2
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 1.5e-14 83.2 53 71.7
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.5e-14 83.2 89 56.2
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 2.0e-14 82.8 89 49.4
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 5.7e-14 81.3 94 54.3
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 9.8e-14 80.5 93 50.5
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 9.8e-14 80.5 88 52.3
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.3e-13 80.1 94 53.2
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.3e-13 80.1 51 70.6
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 2.2e-13 79.3 91 50.5
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 2.8e-13 79.0 92 50.0
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 2.8e-13 79.0 90 51.1
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 2.8e-13 79.0 65 55.4
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 6.3e-13 77.8 94 54.3
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 6.3e-13 77.8 53 66.0
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.1e-12 77.0 99 47.5
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 1.4e-12 76.6 56 62.5
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 2.4e-12 75.9 45 75.6
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 3.1e-12 75.5 46 78.3
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 4.1e-12 75.1 89 52.8
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.1e-12 75.1 48 70.8
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 5.4e-12 74.7 93 47.3
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.4e-12 74.7 93 47.3
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 7.0e-12 74.3 67 50.7
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 7.0e-12 74.3 55 60.0
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 9.1e-12 73.9 89 48.3
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 9.1e-12 73.9 91 51.6
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 1.2e-11 73.6 93 48.4
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 1.2e-11 73.6 89 50.6
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 1.6e-11 73.2 87 50.6
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.6e-11 73.2 89 48.3
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.6e-11 73.2 93 52.7
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 2.0e-11 72.8 89 51.7
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.0e-11 72.8 93 46.2
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.0e-11 72.8 93 46.2
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 2.7e-11 72.4 91 47.3
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.7e-11 72.4 89 48.3
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 2.7e-11 72.4 88 47.7
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 2.7e-11 72.4 89 47.2
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 4.5e-11 71.6 90 45.6
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 5.9e-11 71.2 87 46.0
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 7.7e-11 70.9 87 49.4
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 7.7e-11 70.9 99 48.5
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 7.7e-11 70.9 89 51.7
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 1.0e-10 70.5 45 66.7
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 1.3e-10 70.1 91 51.6
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 1.3e-10 70.1 89 49.4
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.3e-10 70.1 94 46.8
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 1.3e-10 70.1 94 46.8
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 2.3e-10 69.3 89 44.9
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 2.3e-10 69.3 96 46.9
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 2.3e-10 69.3 92 48.9
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 2.9e-10 68.9 50 64.0
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 5.0e-10 68.2 89 43.8
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 5.0e-10 68.2 91 45.1
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 5.0e-10 68.2 93 45.2
Medtr5g013240 Medicago truncatula HOM05D003010 ORTHO05D003623 5.0e-10 68.2 52 57.7
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 6.6e-10 67.8 89 49.4
Aa31LG9G15070 Aethionema arabicum HOM05D003010 ORTHO05D003623 8.6e-10 67.4 91 44.0
BcaB01g03891 Brassica carinata HOM05D003010 ORTHO05D003623 8.6e-10 67.4 89 44.9
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 8.6e-10 67.4 94 45.7
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 8.6e-10 67.4 93 45.2
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 8.6e-10 67.4 88 51.1
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 8.6e-10 67.4 91 46.2
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.1e-09 67.0 88 51.1
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.1e-09 67.0 88 51.1
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 1.1e-09 67.0 94 45.7
arahy.Tifrunner.gnm1.ann1.AIXL5Y Arachis hypogaea HOM05D003010 ORTHO05D003623 1.5e-09 66.6 48 60.4
arahy.Tifrunner.gnm1.ann1.YNCC4F Arachis hypogaea HOM05D003010 ORTHO05D003623 1.5e-09 66.6 48 60.4
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 1.5e-09 66.6 95 46.3
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 1.5e-09 66.6 95 46.3
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.9e-09 66.2 92 44.6
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 2.5e-09 65.9 91 47.3
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 3.3e-09 65.5 94 44.7
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 3.3e-09 65.5 48 56.2
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 3.3e-09 65.5 48 56.2
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 3.3e-09 65.5 90 45.6
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 3.3e-09 65.5 47 59.6
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 5.5e-09 64.7 93 44.1
BcaC01g05717 Brassica carinata HOM05D003010 ORTHO05D003623 5.5e-09 64.7 89 41.6
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 7.2e-09 64.3 93 43.0
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 7.2e-09 64.3 91 48.4
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 9.5e-09 63.9 94 43.6
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 9.5e-09 63.9 89 44.9
Manes.14G039600 Manihot esculenta HOM05D003010 ORTHO05D003623 9.5e-09 63.9 48 62.5
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 9.5e-09 63.9 93 41.9
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 9.5e-09 63.9 92 41.3
HanXRQChr17g0550011 Helianthus annuus HOM05D003010 ORTHO05D003623 1.2e-08 63.5 90 44.4
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.6e-08 63.2 46 63.0
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.6e-08 63.2 49 57.1
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.6e-08 63.2 89 44.9
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 1.6e-08 63.2 46 56.5
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 2.1e-08 62.8 91 45.1
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 2.1e-08 62.8 92 43.5
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 2.1e-08 62.8 95 42.1
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 2.1e-08 62.8 95 42.1
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.1e-08 62.8 97 45.4
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 2.8e-08 62.4 91 45.1
Sed0000436 Sechium edule HOM05D003010 ORTHO05D003623 3.6e-08 62.0 96 44.8
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 4.7e-08 61.6 97 43.3
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 4.7e-08 61.6 97 42.3
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 4.7e-08 61.6 45 55.6
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 4.7e-08 61.6 46 60.9
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 4.7e-08 61.6 94 43.6
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 4.7e-08 61.6 46 60.9
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 6.1e-08 61.2 94 42.6
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 8.0e-08 60.8 45 55.6
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 8.0e-08 60.8 45 55.6
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 8.0e-08 60.8 89 42.7
SGA_v2.0_scaffold104G30217 Striga asiatica HOM05D003010 ORTHO05D003623 8.0e-08 60.8 91 41.8
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 8.0e-08 60.8 89 40.4
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 1.0e-07 60.5 89 42.7
Aa31LG2G13030 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.4e-07 60.1 87 43.7
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 1.4e-07 60.1 89 42.7
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 1.4e-07 60.1 90 42.2
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 1.4e-07 60.1 98 40.8
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 1.4e-07 60.1 45 60.0
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.8e-07 59.7 92 42.4
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.8e-07 59.7 89 42.7
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 1.8e-07 59.7 46 58.7
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.8e-07 59.7 48 54.2
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 2.3e-07 59.3 93 40.9
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.3e-07 59.3 93 46.2
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.3e-07 59.3 93 46.2
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.3e-07 59.3 90 43.3
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.3e-07 59.3 90 43.3
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 3.0e-07 58.9 93 41.9
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.0e-07 58.9 93 41.9
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 3.0e-07 58.9 93 41.9
Lsat_1_v5_gn_4_126000 Lactuca sativa HOM05D003010 ORTHO05D003623 3.0e-07 58.9 91 39.6
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 3.0e-07 58.9 92 39.1
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 3.0e-07 58.9 87 42.5
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 3.0e-07 58.9 92 41.3
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 4.0e-07 58.5 89 42.7
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 4.0e-07 58.5 94 40.4
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 4.0e-07 58.5 90 40.0
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 5.2e-07 58.2 94 40.4
MELO3C013908.2 Cucumis melo HOM05D003010 ORTHO05D003623 6.8e-07 57.8 94 41.5
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 6.8e-07 57.8 91 42.9
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 6.8e-07 57.8 92 43.5
DCAR_000647 Daucus carota HOM05D003010 ORTHO05D003623 8.9e-07 57.4 50 46.0
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.2e-06 57.0 92 42.4
ClCG00G004980 Citrullus lanatus HOM05D003010 ORTHO05D003623 2.0e-06 56.2 90 43.3
ClCG10G002350 Citrullus lanatus HOM05D003010 ORTHO05D003623 2.0e-06 56.2 90 43.3
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.0e-06 56.2 97 43.3
Os06g0600800 Oryza sativa ssp. japonica HOM05D065303 ORTHO05D049753 2.0e-06 56.2 44 54.5
AT4G16840 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 2.6e-06 55.8 87 41.4
BolC3t14689H Brassica oleracea HOM05D003010 ORTHO05D003623 2.6e-06 55.8 83 41.0
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 2.6e-06 55.8 93 39.8
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 2.6e-06 55.8 94 39.4
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 2.6e-06 55.8 93 40.9
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 3.4e-06 55.5 90 38.9
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 3.4e-06 55.5 49 53.1
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 3.4e-06 55.5 49 53.1
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 3.4e-06 55.5 49 53.1
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 3.4e-06 55.5 92 42.4
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 3.4e-06 55.5 88 42.0
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 4.4e-06 55.1 49 53.1
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 4.4e-06 55.1 49 53.1
QL12p009508 Quercus lobata HOM05D003010 ORTHO05D003623 4.4e-06 55.1 36 69.4
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 5.7e-06 54.7 49 55.1
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 7.5e-06 54.3 49 53.1
A03p19640 Brassica napus HOM05D003010 ORTHO05D003623 9.8e-06 53.9 83 38.6
BraA03t11217Z Brassica rapa HOM05D003010 ORTHO05D003623 9.8e-06 53.9 83 38.6
CARHR275430 Cardamine hirsuta HOM05D003010 ORTHO05D003623 9.8e-06 53.9 89 41.6
MBI01_g37950_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 9.8e-06 53.9 37 67.6


User provided reference genes

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