Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.1e-81 305.8 179 100.0
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.4e-39 165.6 182 62.6
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 5.1e-35 151.8 179 53.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.1e-26 124.0 127 65.4
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 5.7e-26 121.7 178 50.6
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 1.7e-25 120.2 134 61.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.8e-25 119.4 134 60.4
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.8e-24 116.7 136 58.1
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.4e-24 116.3 129 64.3
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 9.1e-24 114.4 149 55.0
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.2e-23 114.0 137 56.9
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.5e-23 112.1 125 63.2
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 7.7e-23 111.3 124 62.9
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 7.7e-23 111.3 126 58.7
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.0e-22 110.9 180 45.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.0e-22 110.9 123 58.5
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.0e-22 110.9 183 51.9
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.3e-22 110.5 179 50.3
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 2.9e-22 109.4 179 47.5
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.9e-22 109.4 180 50.6
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.5e-22 108.2 136 55.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.5e-22 108.2 177 49.7
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.5e-22 107.8 126 57.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.1e-21 107.5 185 48.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.1e-21 107.5 136 55.1
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.5e-21 107.1 122 60.7
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.5e-21 106.3 136 54.4
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.2e-21 105.9 188 50.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.5e-21 105.1 180 47.8
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.2e-21 104.8 136 54.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 7.2e-21 104.8 183 47.5
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 9.4e-21 104.4 180 45.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.2e-20 104.0 182 47.3
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.6e-20 103.6 182 44.0
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.6e-20 103.6 180 46.7
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.6e-20 103.6 135 53.3
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 2.1e-20 103.2 104 63.5
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.6e-20 102.4 180 47.2
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 6.1e-20 101.7 127 54.3
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.0e-20 101.3 182 46.7
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.0e-19 100.9 103 63.1
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.8e-19 100.1 148 49.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.3e-19 99.8 160 49.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.3e-19 99.8 160 49.4
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.0e-19 99.4 134 53.7
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 4.0e-19 99.0 127 52.8
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.0e-19 99.0 181 43.1
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 4.0e-19 99.0 182 45.1
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 5.2e-19 98.6 136 52.2
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 8.8e-19 97.8 136 50.7
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 8.8e-19 97.8 180 46.1
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 2.0e-18 96.7 113 59.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.6e-18 96.3 134 51.5
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 3.4e-18 95.9 154 46.1
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.4e-18 95.9 105 61.9
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.4e-18 95.9 136 51.5
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 4.4e-18 95.5 182 45.1
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 5.7e-18 95.1 137 52.6
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 7.5e-18 94.7 143 48.3
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.8e-18 94.4 134 54.5
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 9.8e-18 94.4 172 43.0
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.3e-17 94.0 103 60.2
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.7e-17 93.6 183 44.8
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.7e-17 93.6 134 49.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.7e-17 93.6 138 52.2
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 2.2e-17 93.2 149 48.3
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 3.7e-17 92.4 137 51.8
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.7e-17 92.4 143 48.3
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.7e-17 92.4 105 61.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.7e-17 92.4 105 61.0
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.8e-17 92.0 124 54.8
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 4.8e-17 92.0 89 65.2
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 4.8e-17 92.0 89 65.2
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.8e-17 92.0 144 45.8
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.8e-17 92.0 134 53.7
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 6.3e-17 91.7 124 54.8
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 8.3e-17 91.3 103 59.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-16 90.9 153 45.1
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.1e-16 90.9 102 61.8
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-16 90.5 141 48.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.8e-16 90.1 148 47.3
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.8e-16 90.1 148 47.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.1e-16 89.4 129 57.4
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 4.1e-16 89.0 127 52.8
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.1e-16 89.0 121 52.9
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 4.1e-16 89.0 182 43.4
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 7.0e-16 88.2 92 60.9
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.0e-15 86.7 110 56.4
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 4.5e-15 85.5 181 43.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.0e-14 84.3 177 42.9
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.0e-14 84.3 180 44.4
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.7e-14 83.6 139 46.8
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 2.2e-14 83.2 101 55.4
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.2e-14 83.2 178 43.3
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.2e-14 83.2 101 59.4
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 2.9e-14 82.8 111 55.9
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 2.9e-14 82.8 111 55.9
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 2.9e-14 82.8 141 48.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 3.8e-14 82.4 96 60.4
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 6.5e-14 81.6 177 40.7
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 8.5e-14 81.3 103 60.2
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 8.5e-14 81.3 109 58.7
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.1e-13 80.9 120 51.7
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.9e-13 80.1 136 48.5
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.5e-13 79.7 137 45.3
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.5e-13 79.7 116 40.5
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.5e-13 79.7 87 55.2
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 2.5e-13 79.7 135 48.9
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.2e-13 79.3 88 62.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 4.2e-13 79.0 113 55.8
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 7.2e-13 78.2 216 37.0
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.2e-13 78.2 139 49.6
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 9.4e-13 77.8 58 63.8
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 9.4e-13 77.8 141 46.8
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.2e-12 77.4 178 42.7
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.1e-12 76.6 48 68.8
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 3.6e-12 75.9 126 46.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 3.6e-12 75.9 99 55.6
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 6.1e-12 75.1 180 41.7
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 6.1e-12 75.1 100 56.0
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 6.1e-12 75.1 183 42.6
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 8.0e-12 74.7 99 53.5
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.0e-11 74.3 96 56.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.0e-11 74.3 96 56.2
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.0e-11 74.3 146 45.9
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.8e-11 73.6 88 51.1
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.8e-11 73.6 179 43.0
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.3e-11 73.2 65 75.4
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 3.0e-11 72.8 159 42.1
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 4.0e-11 72.4 90 57.8
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.2e-11 72.0 135 39.3
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.2e-11 72.0 197 40.6
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.2e-10 70.9 84 47.6
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 2.6e-10 69.7 116 48.3
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 4.4e-10 68.9 65 73.8
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.4e-10 68.9 65 72.3
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 7.5e-10 68.2 104 53.8
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 9.8e-10 67.8 116 51.7
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 2.2e-09 66.6 74 50.0
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.2e-09 66.6 93 55.9
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.9e-09 65.5 65 70.8
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 6.3e-09 65.1 184 40.8
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 6.3e-09 65.1 184 41.8
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.3e-09 64.7 152 42.8
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.1e-08 64.3 65 64.6
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.4e-08 62.0 64 70.3
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 9.1e-08 61.2 145 44.8
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 9.1e-08 61.2 114 46.5
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.2e-07 60.8 100 39.0
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 1.2e-07 60.8 62 61.3
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 4.5e-07 58.9 76 47.4
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 7.7e-07 58.2 143 39.9
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 1.0e-06 57.8 143 39.9
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 2.3e-06 56.6 129 47.3


User provided reference genes

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