Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.3e-37 160.2 91 100.0
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.5e-22 110.2 91 80.2
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 2.0e-11 73.2 53 69.8
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 2.0e-11 73.2 58 62.1
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.2e-10 69.7 52 67.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 3.8e-10 68.9 47 70.2
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 5.0e-10 68.6 64 54.7
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 6.5e-10 68.2 48 70.8
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.1e-09 67.4 65 56.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.5e-09 66.2 41 78.0
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 5.5e-09 65.1 41 73.2
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 5.5e-09 65.1 46 65.2
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 5.5e-09 65.1 49 65.3
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 7.2e-09 64.7 60 58.3
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 7.2e-09 64.7 66 56.1
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 9.4e-09 64.3 46 63.0
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.6e-08 63.5 40 72.5
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 2.1e-08 63.2 41 70.7
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 2.1e-08 63.2 40 72.5
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.1e-08 63.2 52 61.5
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.7e-08 62.8 67 55.2
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 3.6e-08 62.4 46 65.2
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 3.6e-08 62.4 54 57.4
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 3.6e-08 62.4 46 65.2
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 3.6e-08 62.4 45 64.4
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 3.6e-08 62.4 76 47.4
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 4.7e-08 62.0 44 68.2
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 4.7e-08 62.0 51 60.8
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 4.7e-08 62.0 51 60.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.1e-08 61.6 49 61.2
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 6.1e-08 61.6 69 52.2
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 6.1e-08 61.6 54 63.0
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 8.0e-08 61.2 40 70.0
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 8.0e-08 61.2 50 62.0
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 8.0e-08 61.2 50 62.0
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 8.0e-08 61.2 57 57.9
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 8.0e-08 61.2 46 63.0
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 8.0e-08 61.2 61 54.1
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.0e-07 60.8 71 47.9
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.0e-07 60.8 39 71.8
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.0e-07 60.8 39 71.8
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.0e-07 60.8 39 71.8
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.0e-07 60.8 70 51.4
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.4e-07 60.5 54 57.4
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.4e-07 60.5 83 50.6
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.4e-07 60.5 49 63.3
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.3e-07 59.7 65 52.3
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 3.0e-07 59.3 61 52.5
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.0e-07 59.3 57 56.1
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 4.0e-07 58.9 55 56.4
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 4.0e-07 58.9 64 51.6
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.2e-07 58.5 52 55.8
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 5.2e-07 58.5 48 58.3
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 5.2e-07 58.5 54 55.6
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.2e-07 58.5 84 48.8
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 5.2e-07 58.5 50 62.0
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 6.7e-07 58.2 58 55.2
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 6.7e-07 58.2 52 53.8
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 8.8e-07 57.8 76 47.4
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.8e-07 57.8 66 51.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 8.8e-07 57.8 54 55.6
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 8.8e-07 57.8 52 55.8
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.2e-06 57.4 46 58.7
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 1.2e-06 57.4 41 63.4
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.2e-06 57.4 50 54.0
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.5e-06 57.0 39 64.1
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.5e-06 57.0 59 50.8
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.0e-06 56.6 58 51.7
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.6e-06 56.2 64 48.4
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.6e-06 56.2 64 48.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.6e-06 56.2 53 56.6
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 3.3e-06 55.8 62 45.2
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 3.3e-06 55.8 60 51.7
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 3.3e-06 55.8 52 53.8
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 5.7e-06 55.1 53 54.7
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 5.7e-06 55.1 59 50.8
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 5.7e-06 55.1 40 57.5
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 5.7e-06 55.1 46 56.5
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 7.5e-06 54.7 57 50.9
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 7.5e-06 54.7 57 50.9
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 7.5e-06 54.7 57 49.1
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 7.5e-06 54.7 59 52.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 9.7e-06 54.3 57 50.9
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 9.7e-06 54.3 53 54.7
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 9.7e-06 54.3 63 50.8


User provided reference genes

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