Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 2.2e-52 208.8 110 100.0
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 6.0e-26 120.9 111 61.3
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 1.2e-23 113.2 101 62.4
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 1.1e-22 110.2 93 63.4
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 1.1e-22 110.2 101 59.4
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 4.0e-22 108.2 108 55.6
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 6.8e-22 107.5 109 54.1
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 1.5e-21 106.3 107 53.3
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 1.5e-21 106.3 107 54.2
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 1.5e-21 106.3 110 57.3
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.6e-21 105.5 112 55.4
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 3.4e-21 105.1 104 58.7
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.4e-21 105.1 104 58.7
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.4e-21 105.1 104 58.7
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 3.4e-21 105.1 109 55.0
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.8e-20 101.7 104 57.7
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 4.9e-20 101.3 101 56.4
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 4.9e-20 101.3 90 62.2
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 8.4e-20 100.5 104 56.7
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 8.4e-20 100.5 104 56.7
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 1.9e-19 99.4 91 61.5
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 3.2e-19 98.6 105 49.5
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 9.2e-19 97.1 91 57.1
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 9.2e-19 97.1 108 50.9
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 9.2e-19 97.1 104 54.8
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 2.1e-18 95.9 94 57.4
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 2.1e-18 95.9 109 50.5
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 4.6e-18 94.7 106 47.2
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 4.6e-18 94.7 89 59.6
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 7.8e-18 94.0 108 51.9
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 7.8e-18 94.0 86 58.1
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 1.3e-17 93.2 81 53.1
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 1.3e-17 93.2 89 57.3
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 1.3e-17 93.2 109 46.8
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 1.3e-17 93.2 88 56.8
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.7e-17 92.8 89 52.8
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 1.7e-17 92.8 109 45.9
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 1.7e-17 92.8 89 59.6
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 2.3e-17 92.4 99 49.5
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.3e-17 92.4 93 52.7
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 3.0e-17 92.0 102 47.1
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 3.0e-17 92.0 93 51.6
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 3.9e-17 91.7 112 52.7
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 5.1e-17 91.3 109 45.9
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 5.1e-17 91.3 107 47.7
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 6.6e-17 90.9 98 49.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 8.7e-17 90.5 99 49.5
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 8.7e-17 90.5 105 51.4
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 1.5e-16 89.7 89 52.8
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 1.5e-16 89.7 109 51.4
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 1.5e-16 89.7 88 56.8
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 3.3e-16 88.6 93 49.5
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 4.3e-16 88.2 92 51.1
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 4.3e-16 88.2 92 51.1
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 4.3e-16 88.2 89 57.3
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 5.6e-16 87.8 113 49.6
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 9.6e-16 87.0 92 50.0
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 1.2e-15 86.7 84 57.1
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 1.6e-15 86.3 93 46.2
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 2.1e-15 85.9 87 54.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 3.6e-15 85.1 88 53.4
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 3.6e-15 85.1 111 47.7
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 3.6e-15 85.1 87 50.6
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 4.7e-15 84.7 92 48.9
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 4.7e-15 84.7 111 47.7
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 6.2e-15 84.3 93 48.4
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 8.1e-15 84.0 95 56.8
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 1.8e-14 82.8 96 51.0
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 1.8e-14 82.8 96 51.0
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 1.8e-14 82.8 93 49.5
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 1.8e-14 82.8 93 49.5
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 1.8e-14 82.8 121 44.6
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 2.4e-14 82.4 93 46.2
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 4.0e-14 81.6 81 53.1
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 4.0e-14 81.6 87 55.2
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 5.2e-14 81.3 87 50.6
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 9.0e-14 80.5 88 48.9
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 1.2e-13 80.1 110 44.5
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.5e-13 79.7 87 52.9
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 2.0e-13 79.3 108 44.4
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 4.4e-13 78.2 90 51.1
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 4.4e-13 78.2 119 43.7
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 5.8e-13 77.8 111 45.9
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 9.9e-13 77.0 68 55.9
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 4.9e-12 74.7 83 55.4
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 4.9e-12 74.7 90 51.1
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 8.4e-12 73.9 100 49.0
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 8.4e-12 73.9 113 42.5
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 3.2e-11 72.0 103 47.6
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 3.2e-11 72.0 58 56.9
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 9.3e-11 70.5 103 46.6
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.6e-10 69.7 64 57.8
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 2.7e-10 68.9 87 47.1
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 6.0e-10 67.8 87 49.4
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.7e-09 66.2 51 56.9
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 1.1e-08 63.5 48 56.2
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.5e-08 63.2 91 42.9
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 3.3e-08 62.0 91 40.7
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 5.6e-08 61.2 60 48.3
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 1.1e-06 57.0 46 58.7


User provided reference genes

Program Settings