Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 4.3e-178 627.9 314 100.0
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.0e-70 271.2 293 48.5
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.9e-70 269.2 312 47.4
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.5e-69 267.3 319 45.5
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 4.3e-69 265.8 294 47.6
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 4.3e-69 265.8 304 44.4
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 4.3e-69 265.8 319 45.5
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.1e-68 263.5 261 50.6
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 6.2e-68 261.9 293 48.8
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 8.9e-67 258.1 292 45.9
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.2e-66 257.7 320 43.4
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.5e-66 257.3 302 43.7
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.6e-66 256.5 306 45.4
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 9.9e-66 254.6 289 47.4
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 4.9e-65 252.3 271 48.7
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 4.9e-65 252.3 300 44.0
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.4e-64 248.8 310 44.8
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.4e-64 248.8 310 44.8
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 5.4e-64 248.8 319 44.8
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.5e-63 246.1 310 43.9
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 7.8e-63 245.0 310 44.2
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.8e-63 245.0 310 44.2
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.3e-62 244.2 304 43.8
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.7e-62 243.8 275 46.2
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.7e-62 243.8 252 50.0
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.9e-62 242.7 310 43.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.1e-61 241.1 281 45.6
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.5e-61 240.7 286 44.1
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.5e-61 240.7 294 44.6
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.3e-61 239.6 300 41.0
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 3.3e-61 239.6 253 47.4
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 7.3e-61 238.4 256 47.3
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 7.3e-61 238.4 296 43.9
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.3e-60 237.7 296 43.9
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.6e-60 237.3 296 43.9
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.1e-60 236.9 303 43.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.8e-60 236.5 296 44.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-59 234.6 300 40.7
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-59 234.6 300 40.7
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.8e-59 233.8 293 42.3
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.8e-59 233.8 308 43.8
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.0e-59 232.6 277 45.5
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 6.9e-59 231.9 261 47.5
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.5e-58 230.7 290 42.1
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 2.0e-58 230.3 262 43.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 7.6e-58 228.4 274 43.4
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 7.6e-58 228.4 230 49.1
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.2e-57 226.9 294 40.8
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.2e-57 226.9 255 46.3
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.9e-57 226.5 295 43.1
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.9e-57 226.5 264 47.7
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 6.4e-57 225.3 255 46.7
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.1e-56 224.6 291 43.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.1e-56 224.6 255 46.7
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.4e-56 223.4 292 43.2
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 3.2e-56 223.0 266 41.7
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 9.3e-56 221.5 331 39.6
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 9.3e-56 221.5 254 46.9
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.7e-55 219.9 230 48.7
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 3.5e-55 219.5 262 42.4
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.5e-55 219.5 265 45.7
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 6.0e-55 218.8 260 44.6
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 6.0e-55 218.8 272 42.3
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.7e-54 217.2 256 46.1
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.0e-54 216.5 252 47.6
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 3.9e-54 216.1 272 43.0
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-53 214.5 255 44.7
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-53 214.5 255 44.7
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-53 214.5 255 44.7
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.9e-53 213.8 262 39.3
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.5e-53 213.4 259 43.6
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 5.6e-53 212.2 233 45.5
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.6e-52 209.5 254 45.3
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 3.6e-52 209.5 234 44.9
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 3.6e-52 209.5 288 43.1
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 5.3e-51 205.7 269 41.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.6e-50 203.4 261 41.4
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.6e-50 203.4 278 39.2
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 5.8e-50 202.2 265 41.1
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 7.6e-50 201.8 290 38.3
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.9e-49 199.9 262 43.9
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.1e-48 198.0 264 40.5
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.9e-48 197.2 300 40.3
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.2e-48 196.4 301 39.2
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 4.2e-48 196.1 298 39.9
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.1e-48 195.3 273 41.4
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 9.3e-48 194.9 262 43.5
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.6e-47 194.1 287 39.4
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 1.6e-47 194.1 289 40.8
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-47 193.0 264 40.5
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 6.0e-47 192.2 302 39.1
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-47 192.2 273 40.7
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 7.9e-47 191.8 274 39.1
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.9e-47 191.8 273 40.7
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.9e-47 191.8 273 40.7
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-46 191.0 273 40.3
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-46 191.0 273 40.3
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-46 191.0 267 40.8
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-46 190.3 273 40.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 2.3e-46 190.3 303 38.3
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-46 189.9 273 40.3
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-46 189.9 273 40.7
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.1e-46 189.1 273 40.3
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 6.7e-46 188.7 288 38.5
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 3.3e-45 186.4 312 38.5
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 5.6e-45 185.7 311 37.9
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 7.4e-45 185.3 311 38.6
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 3.7e-44 183.0 294 38.4
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.1e-43 181.4 312 36.9
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.1e-43 181.4 312 36.9
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.8e-43 180.6 312 36.9
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 4.0e-43 179.5 254 41.7
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 2.6e-42 176.8 177 49.7
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-42 176.0 247 41.3
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 7.6e-42 175.3 260 37.3
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 7.1e-40 168.7 272 37.5
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 9.3e-40 168.3 221 40.7
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 9.3e-40 168.3 245 40.8
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.6e-39 167.5 216 41.7
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 6.0e-39 165.6 267 34.5
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.3e-38 164.5 245 41.2
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.9e-37 160.6 290 35.5
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.1e-35 152.9 155 49.0
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-34 151.0 211 40.3
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.0e-34 150.6 300 37.0
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-33 146.4 192 40.6
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-33 145.6 177 42.9
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-32 144.1 180 42.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.9e-32 144.1 202 39.6
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.2e-31 141.4 243 33.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.0e-30 138.3 265 33.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.8e-28 129.4 142 48.6
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.1e-27 126.3 268 31.7
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-26 124.0 197 39.6
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.5e-26 122.9 125 47.2
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 3.0e-22 110.2 286 28.3
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-22 109.8 152 41.4
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 3.4e-18 96.7 209 31.1
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.7e-17 94.4 199 31.2
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 8.5e-17 92.0 206 30.1
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.4e-13 79.7 100 38.0
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 9.1e-11 72.0 82 43.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 6.5e-09 65.9 71 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 1.5e-08 64.7 150 28.7
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.7e-06 55.8 84 35.7


User provided reference genes

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