Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.8e-107 392.5 188 100.0
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 5.5e-104 380.9 189 97.4
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 4.8e-100 367.9 183 93.4
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.8e-100 367.9 185 92.4
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.1e-99 366.7 188 89.4
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.4e-99 365.5 188 91.5
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 2.4e-99 365.5 188 89.9
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 3.1e-99 365.2 183 91.8
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 4.1e-99 364.8 183 91.8
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 5.3e-99 364.4 185 91.4
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 6.9e-99 364.0 188 89.4
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 6.9e-99 364.0 183 92.3
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 9.1e-99 363.6 185 90.3
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 1.2e-98 363.2 186 90.3
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.6e-98 362.1 185 89.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.6e-98 362.1 188 89.4
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 2.6e-98 362.1 183 91.8
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.4e-98 361.7 188 88.8
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 7.7e-98 360.5 188 88.8
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 7.7e-98 360.5 188 88.8
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.0e-97 360.1 185 89.7
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.0e-97 360.1 188 88.3
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.7e-97 359.4 179 92.2
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.2e-97 359.0 184 89.7
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.2e-97 359.0 183 90.2
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 2.2e-97 359.0 186 88.2
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.8e-97 358.2 183 89.1
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 3.8e-97 358.2 186 88.7
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.5e-97 357.5 186 88.7
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.1e-96 356.7 183 89.1
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.1e-96 356.7 185 88.1
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.1e-96 356.7 185 89.2
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 1.9e-96 355.9 183 88.5
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 1.9e-96 355.9 184 89.1
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 2.5e-96 355.5 185 88.1
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.5e-96 355.5 188 87.8
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.2e-96 355.1 183 88.5
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 3.2e-96 355.1 185 87.6
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.2e-96 355.1 185 87.6
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.2e-96 355.1 185 87.6
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 3.2e-96 355.1 187 87.2
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 4.2e-96 354.8 185 88.6
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 4.2e-96 354.8 185 88.6
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 7.2e-96 354.0 186 88.2
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 9.4e-96 353.6 186 86.6
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 9.4e-96 353.6 186 86.6
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.6e-95 352.8 184 87.5
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 2.1e-95 352.4 185 87.6
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.7e-95 352.1 186 87.1
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 2.7e-95 352.1 184 89.1
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 3.6e-95 351.7 186 87.6
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.6e-95 351.3 186 86.0
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 4.6e-95 351.3 183 86.9
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 7.9e-95 350.5 184 85.9
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.0e-94 350.1 184 88.0
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.4e-94 349.7 205 81.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.4e-94 349.7 182 87.4
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.3e-94 349.0 184 87.5
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 3.0e-94 348.6 183 87.4
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 3.0e-94 348.6 181 88.4
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 3.0e-94 348.6 185 86.5
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 5.1e-94 347.8 186 84.4
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 6.7e-94 347.4 184 84.8
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 6.7e-94 347.4 184 86.4
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.1e-93 346.7 185 84.9
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.5e-93 346.3 186 85.5
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.5e-93 346.3 185 85.9
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 2.0e-93 345.9 186 84.4
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 2.0e-93 345.9 187 85.0
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.6e-93 345.5 185 85.9
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 2.6e-93 345.5 184 85.9
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 4.4e-93 344.7 184 86.4
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 4.4e-93 344.7 185 85.4
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 4.4e-93 344.7 185 85.9
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 5.7e-93 344.4 183 85.2
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 5.7e-93 344.4 187 85.0
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 7.4e-93 344.0 183 85.2
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 7.4e-93 344.0 184 85.9
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 9.7e-93 343.6 185 85.4
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.3e-92 343.2 185 84.3
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.3e-92 343.2 183 85.2
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.3e-92 343.2 185 85.4
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.7e-92 342.8 184 85.9
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.8e-92 342.0 186 83.9
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 4.8e-92 341.3 184 83.2
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 8.2e-92 340.5 184 83.2
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.8e-91 339.3 185 82.2
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.8e-91 339.3 186 84.4
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 2.4e-91 339.0 183 83.6
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.4e-91 339.0 226 74.3
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 3.1e-91 338.6 184 82.6
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 4.1e-91 338.2 184 82.6
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 5.3e-91 337.8 184 84.2
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 5.3e-91 337.8 184 83.2
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 6.9e-91 337.4 184 82.6
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.2e-90 336.7 184 82.6
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.5e-90 336.3 184 82.1
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.5e-90 336.3 183 85.2
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 2.0e-90 335.9 183 83.1
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 2.6e-90 335.5 183 82.5
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.6e-90 335.5 190 83.2
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 3.4e-90 335.1 183 82.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 3.4e-90 335.1 183 82.0
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 4.5e-90 334.7 185 80.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 5.9e-90 334.3 186 81.7
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 5.9e-90 334.3 185 79.5
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 7.7e-90 334.0 183 82.0
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 7.7e-90 334.0 183 82.0
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 1.3e-89 333.2 183 82.0
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.3e-89 333.2 183 82.0
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.2e-89 332.4 183 82.0
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.2e-89 332.4 183 82.0
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.2e-89 332.4 183 82.0
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 2.2e-89 332.4 183 81.4
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 2.9e-89 332.0 168 90.5
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.9e-89 332.0 186 82.3
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-89 331.6 183 82.0
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 3.8e-89 331.6 183 82.0
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 6.5e-89 330.9 185 82.7
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 8.5e-89 330.5 225 71.1
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.4e-88 329.7 189 82.0
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.4e-88 329.7 170 88.8
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.6e-87 326.2 184 81.0
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 4.7e-87 324.7 184 79.9
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 7.9e-87 323.9 184 79.9
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.4e-86 323.2 183 82.5
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 3.0e-86 322.0 174 85.1
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 5.2e-86 321.2 185 80.0
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 6.7e-86 320.9 186 79.0
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 8.8e-86 320.5 186 78.5
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 4.4e-85 318.2 186 78.0
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 8.2e-84 313.9 167 86.8
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 3.1e-83 312.0 169 84.0
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 7.0e-83 310.8 168 86.3
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 1.2e-82 310.1 153 93.5
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.0e-81 307.0 186 78.0
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 3.8e-81 305.1 211 68.2
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 5.0e-81 304.7 168 81.5
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 4.7e-79 298.1 167 80.8
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 2.3e-78 295.8 184 75.0
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 3.0e-78 295.4 184 75.0
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.0e-78 295.4 151 90.7
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 8.8e-78 293.9 151 90.7
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.5e-77 293.1 168 79.2
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.4e-75 286.6 150 87.3
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 3.1e-75 285.4 161 82.0
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 2.0e-74 282.7 185 71.4
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.0e-73 280.4 185 68.6
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 1.3e-73 280.0 151 83.4
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.7e-73 279.6 223 63.7
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.6e-71 273.1 177 70.1
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 2.1e-71 272.7 167 80.2
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 6.1e-71 271.2 292 49.7
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.4e-69 265.4 133 91.0
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 3.7e-68 261.9 152 79.6
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 8.3e-68 260.8 144 84.0
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 2.5e-64 249.2 138 83.3
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.8e-63 245.7 156 75.6
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.8e-62 243.0 120 91.7
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 6.8e-62 241.1 189 55.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 2.9e-57 225.7 151 74.8
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 6.6e-57 224.6 121 86.8
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.5e-56 223.4 153 70.6
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.6e-56 221.5 166 67.5
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 2.1e-47 193.0 96 95.8
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 4.6e-42 175.3 89 88.8
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.8e-39 166.0 90 84.4
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 2.6e-37 159.5 87 86.2
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 9.5e-32 141.0 69 89.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.0e-29 133.3 71 83.1
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 8.6e-25 117.9 65 86.2
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 1.2e-23 114.0 85 70.6
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 2.2e-20 103.2 55 87.3
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.6e-18 97.1 44 90.9
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 5.4e-11 72.0 113 38.9
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 9.3e-11 71.2 30 96.7
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.2e-10 70.9 37 81.1
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 3.0e-09 66.2 56 55.4
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 2.5e-08 63.2 36 80.6
MBI17_g19514_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.8e-07 59.7 35 77.1


User provided reference genes

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