Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 0.0e+00 1669.4 828 100.0
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 0.0e+00 1127.9 819 68.9
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1088.6 811 67.0
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 0.0e+00 1083.2 814 65.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 4.0e-311 1071.2 814 64.0
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 4.0e-311 1071.2 817 64.5
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.9e-308 1060.1 804 66.0
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.1e-305 1053.1 818 63.3
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.9e-305 1052.4 802 66.5
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 6.0e-304 1047.3 803 64.8
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 6.0e-304 1047.3 815 65.6
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.7e-303 1045.8 790 66.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.6e-301 1038.1 816 64.5
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 8.1e-301 1036.9 819 64.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 3.2e-297 1025.0 771 67.4
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.7e-296 1021.9 810 63.8
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.9e-294 1015.8 810 63.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 7.6e-291 1003.8 823 61.6
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.9e-289 999.2 843 60.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.2e-289 998.4 828 60.9
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 2.1e-288 995.7 793 62.3
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 8.7e-287 990.3 789 63.5
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.1e-286 989.9 798 61.4
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.9e-286 989.2 763 64.6
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 3.3e-286 988.4 806 62.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 7.4e-286 987.3 769 65.8
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.4e-284 982.2 809 60.3
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 6.9e-284 980.7 806 62.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.5e-283 979.5 830 59.8
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 3.4e-283 978.4 820 62.3
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 9.9e-283 976.9 815 61.5
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 9.9e-283 976.9 742 67.5
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.3e-282 976.5 821 60.5
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 2.2e-282 975.7 806 61.5
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.4e-282 973.8 796 61.6
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.2e-281 971.5 816 60.0
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.6e-280 969.5 822 60.7
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.3e-279 966.5 810 61.7
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.5e-278 963.0 828 58.9
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.3e-277 959.9 825 58.9
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.3e-277 959.9 801 60.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.8e-277 958.0 821 59.6
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 2.0e-275 952.6 800 59.0
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.6e-275 952.2 790 60.5
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 3.8e-274 948.3 820 59.8
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 6.5e-274 947.6 817 59.7
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.9e-273 946.0 833 57.6
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 9.3e-273 943.7 823 59.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 9.3e-273 943.7 791 60.4
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.2e-272 943.3 797 59.8
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 6.7e-271 937.6 827 58.3
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 8.7e-271 937.2 799 59.2
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.5e-270 936.4 806 59.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 5.7e-270 934.5 790 58.7
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.7e-270 934.5 833 56.9
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.1e-268 930.2 815 59.4
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.8e-268 929.5 798 59.0
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.9e-268 927.5 793 59.3
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.2e-267 926.8 802 58.4
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.2e-267 926.8 820 57.9
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 4.5e-267 924.9 797 59.0
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.2e-266 922.5 770 60.1
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 6.5e-266 921.0 819 57.5
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.9e-265 919.5 804 58.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 3.2e-265 918.7 816 57.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.2e-265 918.3 870 54.8
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.6e-264 916.4 681 68.4
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.4e-263 913.3 802 59.6
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.0e-263 912.1 796 56.7
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 3.9e-263 911.8 788 58.2
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.1e-263 911.4 828 56.8
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 6.7e-263 911.0 756 60.6
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 8.8e-263 910.6 820 57.4
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.5e-262 909.8 804 58.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 4.3e-262 908.3 788 58.1
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 5.7e-262 907.9 803 58.9
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 3.7e-261 905.2 809 58.0
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.1e-260 903.7 820 57.3
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.4e-260 903.3 820 56.6
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 4.1e-260 901.7 796 57.0
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.4e-259 898.7 767 59.3
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.2e-258 896.0 827 56.6
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 3.8e-258 895.2 827 56.6
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 8.5e-258 894.0 743 62.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.4e-257 893.3 773 58.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-257 892.9 829 56.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.5e-257 892.5 825 55.9
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.5e-257 892.5 825 55.9
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.2e-256 890.2 803 56.7
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.1e-254 883.6 777 58.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.7e-253 879.8 833 54.6
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 9.1e-252 874.0 804 55.5
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 4.5e-251 871.7 699 63.4
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.0e-248 860.9 656 66.0
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.0e-247 860.5 827 54.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.3e-247 859.4 850 53.4
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.2e-247 858.2 697 62.4
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.5e-246 856.7 830 53.6
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 3.3e-246 855.5 788 56.1
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 9.7e-246 854.0 770 56.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.7e-245 853.2 795 54.6
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.6e-243 845.9 795 53.5
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.9e-242 842.4 728 59.5
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.8e-239 833.2 826 53.1
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 6.7e-239 831.2 798 52.9
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.4e-236 822.8 768 56.9
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 1.3e-221 773.9 671 58.6
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.0e-215 752.3 812 48.6
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.6e-211 740.3 823 47.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 4.6e-211 738.8 848 46.9
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.0e-210 735.3 644 58.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.5e-209 733.8 785 49.0
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.2e-205 719.9 673 55.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.1e-204 717.6 906 45.1
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 9.2e-204 714.5 828 48.4
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.3e-201 706.1 813 49.3
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.0e-199 699.1 515 66.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.6e-192 677.2 715 51.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.1e-188 664.5 788 45.3
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.1e-185 654.4 597 55.4
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 8.4e-181 638.3 780 44.9
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 7.9e-171 605.1 688 48.3
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 6.7e-170 602.1 687 47.3
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.7e-153 545.0 720 42.9
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 2.5e-148 530.4 382 67.5
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.2e-144 517.3 452 58.6
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 3.7e-144 516.5 336 75.3
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-143 515.0 339 75.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.2e-139 501.5 531 49.0
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.9e-130 469.9 717 38.9
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.5e-126 456.8 399 58.1
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 6.6e-109 399.4 625 38.1
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 2.3e-106 391.0 316 62.3
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 8.0e-99 365.9 797 31.5
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 3.2e-95 354.0 365 48.5
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 5.0e-93 346.7 899 27.8
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.4e-88 329.7 355 47.6
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.8e-82 309.7 458 39.1
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 2.7e-78 297.7 410 41.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 1.0e-77 295.8 309 49.8
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.9e-72 276.9 248 55.6
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.4e-65 254.2 516 31.0
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.8e-59 233.8 199 59.8
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.5e-52 212.2 173 63.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 3.3e-52 211.1 176 61.9
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.7e-27 127.9 135 48.1
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 6.3e-27 127.1 116 45.7
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.9e-22 110.2 118 50.0
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.0e-20 105.5 115 45.2
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.6e-20 105.1 87 69.0
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 7.7e-17 93.6 116 49.1
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 2.3e-13 82.0 84 48.8
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.5e-12 79.3 66 47.0
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.3e-11 76.3 50 68.0
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.8e-11 75.1 62 56.5
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 5.3e-10 70.9 36 86.1
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.0e-09 68.9 120 36.7
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.7e-08 65.9 45 53.3


User provided reference genes

Program Settings