Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 8.5e-123 443.7 231 100.0
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 9.1e-85 317.4 232 73.7
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 2.0e-84 316.2 230 74.3
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 8.6e-83 310.8 231 72.3
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 8.6e-83 310.8 227 73.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 2.5e-82 309.3 248 67.3
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.0e-80 303.9 228 69.7
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 4.0e-80 302.0 228 70.6
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.8e-80 301.2 231 70.1
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.2e-79 300.4 228 70.2
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.6e-79 299.3 231 70.1
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.8e-78 295.8 250 65.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 3.7e-78 295.4 231 69.3
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 3.7e-78 295.4 236 69.5
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 8.3e-78 294.3 231 68.8
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 2.4e-77 292.7 215 70.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.4e-77 292.7 231 68.0
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 4.1e-77 292.0 228 68.4
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 4.1e-77 292.0 233 67.0
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 4.1e-77 292.0 228 70.2
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.2e-76 290.4 248 64.9
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.2e-76 290.4 248 64.1
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.2e-76 290.4 252 63.5
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 2.0e-76 289.7 238 67.2
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.5e-76 288.9 228 68.9
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.5e-76 288.5 234 67.5
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.9e-76 288.1 231 68.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.9e-76 288.1 231 67.5
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 7.8e-76 287.7 231 68.0
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.9e-75 285.8 246 64.6
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 5.0e-75 285.0 231 66.7
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.0e-75 285.0 231 67.1
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.0e-75 285.0 229 67.7
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 5.0e-75 285.0 228 66.7
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 8.6e-75 284.3 232 66.8
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 2.5e-74 282.7 232 66.8
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.3e-74 282.3 234 67.1
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 3.3e-74 282.3 247 63.2
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 7.3e-74 281.2 228 66.2
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 9.5e-74 280.8 219 68.5
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 9.5e-74 280.8 250 63.2
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.1e-73 279.6 232 65.5
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 2.1e-73 279.6 232 65.9
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 4.7e-73 278.5 227 66.1
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.0e-72 277.3 231 64.5
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 2.3e-72 276.2 235 66.0
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.3e-72 276.2 229 67.2
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 3.0e-72 275.8 231 64.9
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 5.2e-72 275.0 231 64.5
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.6e-71 272.7 235 65.1
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.8e-71 271.6 235 64.7
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 7.5e-71 271.2 233 64.4
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.3e-70 270.4 215 67.4
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.7e-70 270.0 234 63.7
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.7e-70 270.0 215 67.4
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 4.9e-70 268.5 233 63.1
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 6.4e-70 268.1 227 64.3
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 4.1e-69 265.4 228 64.9
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.2e-68 263.8 227 63.9
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 6.0e-68 261.5 232 61.2
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 7.8e-68 261.2 242 60.3
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.7e-67 260.0 215 65.1
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 2.3e-67 259.6 234 61.5
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 3.9e-67 258.8 244 60.7
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.0e-67 258.5 236 61.0
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.0e-67 258.5 236 61.0
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.1e-66 257.3 240 61.2
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 1.5e-66 256.9 240 61.2
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 1.9e-66 256.5 239 61.5
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 2.5e-66 256.1 215 65.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 2.5e-66 256.1 201 68.7
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 7.3e-66 254.6 263 57.8
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 9.5e-66 254.2 221 64.7
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 9.5e-66 254.2 219 63.5
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.2e-65 253.8 239 61.1
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.6e-65 253.4 254 58.7
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 2.8e-65 252.7 248 59.3
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.8e-65 252.7 248 58.1
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 4.0e-64 248.8 197 70.1
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 6.8e-64 248.1 207 66.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 6.8e-64 248.1 231 60.2
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 8.9e-64 247.7 261 55.6
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 2.0e-63 246.5 198 67.7
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 2.0e-63 246.5 240 59.2
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 2.6e-63 246.1 157 79.6
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 4.4e-63 245.4 228 61.8
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.7e-62 243.4 224 60.7
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.4e-61 240.4 195 67.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.2e-60 237.3 179 69.8
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.7e-60 236.1 202 61.9
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 5.1e-59 231.9 227 60.4
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.1e-58 230.7 201 61.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.8e-56 223.4 201 61.2
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 3.5e-52 209.1 195 60.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.6e-52 208.8 155 69.7
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.6e-49 200.3 229 52.0
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.2e-47 194.1 160 63.8
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 4.4e-47 192.2 235 50.2
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 3.0e-43 179.5 196 52.6
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 3.3e-42 176.0 157 59.2
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 3.1e-40 169.5 208 50.0
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.2e-37 159.5 163 54.6
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 7.1e-37 158.3 213 46.9
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 1.6e-36 157.1 172 50.6
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 3.5e-36 156.0 199 48.2
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.7e-35 153.7 231 46.8
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.2e-31 141.0 112 66.1
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 8.4e-30 134.8 152 47.4
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-28 131.0 92 68.5
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.6e-25 120.6 157 47.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.1e-21 107.8 102 59.8
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 4.2e-21 105.9 165 41.2
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.0e-19 101.3 116 43.1
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.5e-18 97.4 110 51.8
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.5e-12 76.3 217 30.4
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 3.4e-07 59.7 40 70.0


User provided reference genes

Program Settings