Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-224 782.3 399 100.0
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.4e-165 585.9 306 96.4
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 8.2e-158 560.8 405 71.1
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 1.1e-157 560.5 405 70.6
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 5.3e-157 558.1 404 71.8
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 5.3e-157 558.1 404 71.8
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 6.5e-155 551.2 405 69.9
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.9e-154 549.7 404 71.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.4e-152 543.5 405 68.6
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.4e-152 543.5 409 68.2
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.3e-152 542.7 405 68.6
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 3.9e-152 542.0 404 69.6
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.8e-152 540.8 405 68.1
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 1.5e-151 540.0 404 69.3
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.5e-151 540.0 404 69.3
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.0e-151 539.7 404 69.3
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 7.4e-151 537.7 404 69.3
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 2.4e-149 532.7 403 68.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 5.3e-149 531.6 403 66.5
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 2.2e-147 526.2 404 67.1
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 5.0e-147 525.0 404 66.1
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 5.0e-147 525.0 415 66.3
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 8.5e-147 524.2 404 66.1
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.1e-146 523.9 404 66.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.5e-146 523.5 404 69.1
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 4.2e-146 521.9 404 68.1
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 5.5e-146 521.5 402 66.9
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 7.2e-146 521.2 399 66.4
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 7.2e-146 521.2 404 65.3
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 9.4e-146 520.8 404 65.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 3.6e-145 518.8 404 67.1
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.8e-144 516.5 398 66.1
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 6.7e-144 514.6 414 66.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 1.1e-143 513.8 404 65.3
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 1.1e-143 513.8 398 65.8
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 2.0e-143 513.1 406 64.5
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 2.0e-143 513.1 404 66.8
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 3.3e-143 512.3 404 65.8
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 5.7e-143 511.5 404 65.1
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 5.7e-143 511.5 404 64.4
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.7e-143 511.5 400 65.0
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 7.4e-143 511.1 404 64.6
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.3e-142 510.4 398 65.3
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.3e-142 510.4 398 65.3
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 1.7e-142 510.0 404 65.1
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 6.3e-142 508.1 404 66.1
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 8.2e-142 507.7 406 63.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.1e-141 507.3 404 63.4
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.4e-141 506.9 405 63.5
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 2.4e-141 506.1 367 71.1
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 2.4e-141 506.1 404 65.3
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 7.0e-141 504.6 403 64.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.6e-140 503.4 398 65.8
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 3.5e-140 502.3 404 63.4
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 5.9e-140 501.5 404 63.4
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 5.9e-140 501.5 404 63.4
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 5.9e-140 501.5 404 63.4
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 5.0e-139 498.4 403 63.3
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.9e-138 496.5 427 61.8
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 3.2e-138 495.7 404 63.4
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 5.5e-138 495.0 404 63.6
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 7.2e-138 494.6 403 64.0
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 9.4e-138 494.2 403 63.3
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.2e-137 493.8 403 63.5
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.6e-137 493.4 404 64.1
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 2.1e-137 493.0 396 65.9
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.8e-136 490.0 396 65.4
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 5.2e-136 488.4 403 63.3
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 5.2e-136 488.4 403 64.0
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 6.8e-136 488.0 406 62.1
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.0e-135 486.5 399 61.9
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.4e-135 485.7 403 63.0
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.2e-134 483.0 403 60.8
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.3e-134 481.1 403 60.8
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 3.1e-133 479.2 403 62.0
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 5.4e-133 478.4 404 60.9
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 3.5e-132 475.7 404 60.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.9e-131 472.6 430 58.6
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.9e-131 472.6 256 93.4
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 5.0e-131 471.9 399 60.2
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 9.8e-127 457.6 403 60.3
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 1.8e-125 453.4 394 61.4
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.6e-124 450.3 504 50.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.1e-122 444.1 409 55.5
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 9.5e-122 441.0 404 58.2
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.4e-120 437.2 404 57.2
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 5.2e-120 435.3 305 72.1
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 6.8e-120 434.9 354 63.6
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.0e-119 433.3 404 56.9
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 5.0e-115 418.7 407 54.8
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.7e-110 402.5 309 66.0
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.6e-108 397.1 417 52.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 7.3e-106 388.3 360 58.6
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 2.0e-103 380.2 399 49.6
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.3e-98 361.7 348 59.2
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 6.6e-83 312.0 309 54.4
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 5.4e-77 292.4 243 60.9
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-74 284.6 179 85.5
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.5e-74 283.5 393 42.5
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 2.1e-73 280.4 384 41.1
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-63 248.1 326 45.7
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.6e-60 237.7 231 56.3
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-57 228.0 289 46.0
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 8.4e-54 215.3 285 45.6
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 8.4e-54 215.3 386 34.2
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 3.0e-51 206.8 314 36.6
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 1.1e-50 204.9 174 67.2
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.8e-33 146.4 170 48.8
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.4e-32 144.1 152 51.3
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.2e-28 131.7 86 72.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 8.0e-28 129.0 90 68.9
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 9.7e-26 122.1 84 70.2
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 8.5e-22 109.0 130 43.1
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 8.5e-22 109.0 157 40.1
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 7.2e-21 105.9 99 52.5
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-20 104.8 55 89.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.1e-20 102.8 55 87.3
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.8e-19 99.4 55 87.3
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 3.4e-18 97.1 76 65.8
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.5e-18 95.9 55 78.2
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.3e-17 95.1 84 59.5
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-16 92.0 79 69.6
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.8e-16 91.3 55 74.5
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.1e-16 89.0 55 72.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 4.5e-15 86.7 142 39.4
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-14 85.1 55 70.9
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.9e-14 84.0 55 74.5
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.5e-14 82.8 55 69.1
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.9e-13 81.3 162 30.9
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 4.2e-13 80.1 46 78.3
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 4.7e-12 76.6 53 60.4
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.4e-11 75.1 53 60.4
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.8e-11 74.7 50 68.0
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.8e-11 72.8 51 66.7
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.8e-11 72.8 51 66.7
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-10 71.2 82 57.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 7.5e-10 69.3 308 22.4
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 2.0e-07 61.2 57 50.9
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 4.5e-07 60.1 163 27.0


User provided reference genes

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