Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.8e-192 673.7 357 100.0
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 4.6e-160 568.2 322 86.6
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.3e-159 565.8 329 84.2
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.3e-157 560.1 324 84.6
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.4e-156 555.8 325 83.4
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.2e-155 553.5 331 82.5
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.5e-155 553.1 322 84.8
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.5e-155 551.6 357 77.9
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.6e-155 550.8 357 77.9
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 7.6e-155 550.8 362 77.9
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.9e-155 550.4 359 76.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.9e-155 550.4 330 81.8
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 9.9e-155 550.4 324 85.2
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.7e-154 549.7 325 82.5
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.2e-154 549.3 326 83.7
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.4e-153 546.6 331 82.2
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-153 546.6 324 83.0
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.9e-153 546.2 359 76.6
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 7.1e-153 544.3 329 81.2
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 9.3e-153 543.9 332 82.5
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.6e-152 543.1 324 82.1
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.7e-152 542.3 324 82.1
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 4.6e-152 541.6 357 77.3
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.3e-151 540.0 327 81.7
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.1e-150 537.0 326 81.9
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.5e-150 536.6 325 81.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.5e-150 536.6 324 81.5
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.5e-150 536.6 327 81.0
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.9e-150 536.2 326 81.6
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.5e-150 535.8 324 81.8
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 2.5e-150 535.8 335 80.0
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.3e-150 535.4 322 80.4
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 5.6e-150 534.6 328 80.2
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 7.4e-150 534.3 328 81.4
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.3e-149 533.5 344 78.8
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.6e-149 533.1 328 81.1
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 6.2e-149 531.2 328 81.1
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 8.1e-149 530.8 326 81.0
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.8e-148 529.6 307 84.4
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 4.0e-148 528.5 326 80.7
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.0e-148 528.5 326 80.4
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 9.0e-148 527.3 337 78.9
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 9.0e-148 527.3 306 85.0
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.0e-147 526.2 326 80.7
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 9.9e-147 523.9 325 80.0
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.3e-146 523.5 326 80.4
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 2.2e-146 522.7 315 81.9
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.9e-146 522.3 402 67.7
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 8.4e-146 520.8 326 80.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 8.4e-146 520.8 333 78.4
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.9e-145 519.6 333 78.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 4.2e-145 518.5 328 79.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 4.2e-145 518.5 331 78.9
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 5.5e-145 518.1 359 73.8
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 7.1e-145 517.7 328 79.6
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 7.1e-145 517.7 327 79.8
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 7.1e-145 517.7 319 80.3
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.6e-144 516.5 330 78.8
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.6e-144 516.5 327 79.5
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 2.1e-144 516.2 330 79.1
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 2.7e-144 515.8 327 79.5
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 4.6e-144 515.0 359 73.5
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.3e-143 512.7 324 78.7
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 3.0e-143 512.3 361 71.5
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.9e-143 511.9 327 78.3
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.9e-143 511.9 317 81.1
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.5e-142 510.0 328 76.5
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 7.4e-142 507.7 307 82.4
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.6e-141 506.5 296 82.4
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.4e-140 503.4 326 77.6
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 2.4e-140 502.7 377 69.8
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.1e-140 502.3 364 71.2
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.1e-140 502.3 364 71.2
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 9.0e-140 500.7 324 77.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 9.0e-140 500.7 291 83.5
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 9.0e-140 500.7 324 77.2
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.6e-139 499.2 308 79.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.4e-139 498.8 326 77.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 3.4e-139 498.8 326 77.0
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-138 497.3 303 79.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 6.5e-138 494.6 332 74.7
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 8.4e-138 494.2 309 80.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 8.4e-138 494.2 331 76.4
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.4e-137 493.4 335 73.4
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.9e-137 493.0 332 75.9
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.2e-137 492.3 287 82.2
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 5.5e-137 491.5 329 76.3
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.6e-136 490.0 332 75.3
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.1e-136 489.6 284 82.0
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.7e-136 489.2 330 75.8
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 7.9e-136 487.6 358 70.4
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.3e-135 486.9 270 87.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 3.0e-135 485.7 329 74.2
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 5.1e-135 485.0 329 72.6
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 3.3e-134 482.3 331 74.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.4e-132 476.9 325 75.1
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 7.6e-131 471.1 286 78.7
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.7e-130 469.9 342 69.9
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 8.5e-130 467.6 272 83.8
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.5e-129 466.1 309 72.8
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.7e-128 462.6 270 81.9
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.7e-128 462.6 357 66.7
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.5e-126 456.1 373 66.0
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.5e-126 456.1 294 77.9
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.3e-125 453.8 327 70.6
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.6e-125 453.4 314 74.2
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 5.9e-123 444.9 278 79.9
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 2.6e-118 429.5 299 69.6
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 6.3e-117 424.9 317 70.7
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.1e-116 422.5 283 69.3
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.2e-115 420.6 298 73.2
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 5.9e-115 418.3 255 83.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.3e-114 417.2 287 71.8
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.2e-114 416.4 272 73.5
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.2e-111 405.2 286 72.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.0e-110 403.3 256 78.5
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 7.5e-102 374.8 286 69.9
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.8e-100 370.2 256 73.4
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.2e-93 346.7 310 59.4
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 3.8e-90 335.9 218 79.8
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 4.2e-89 332.4 228 72.8
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 6.3e-85 318.5 217 76.0
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 8.3e-77 291.6 153 91.5
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.0e-67 258.8 357 45.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.4e-62 243.0 167 73.7
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.4e-62 242.7 139 81.3
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 2.7e-59 233.4 139 80.6
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 8.1e-56 221.9 155 76.1
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 4.1e-52 209.5 132 75.0
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.1e-47 194.9 109 78.9
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 2.2e-45 187.2 108 76.9
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.3e-40 171.4 272 43.4
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 3.4e-38 163.3 129 60.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.8e-34 151.0 306 32.7
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 2.1e-32 144.1 112 61.6
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-28 131.7 117 56.4
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.1e-27 127.5 124 61.3
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.3e-25 120.2 87 65.5
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 4.8e-24 116.3 289 32.5
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 4.9e-21 106.3 86 58.1
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.6e-19 101.3 53 96.2
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.1e-19 100.9 92 60.9
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 2.7e-19 100.5 93 61.3
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.3e-17 93.2 71 62.0
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 2.2e-16 90.9 52 78.8
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.1e-15 88.6 54 72.2
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 2.4e-15 87.4 78 52.6
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 3.4e-14 83.6 53 73.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 8.8e-10 68.9 37 81.1
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.2e-06 58.5 31 87.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 5.9e-06 56.2 50 60.0


User provided reference genes

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