Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02558 Eucalyptus grandis HOM05D007792 ORTHO05D009931 4.8e-32 140.6 72 100.0
PGR111G0084 Punica granatum HOM05D007792 ORTHO05D009931 2.2e-16 88.6 56 83.9
Gohir.D01G101995 Gossypium hirsutum HOM05D007792 ORTHO05D009931 8.2e-16 86.7 56 82.1
Gohir.D09G044333 Gossypium hirsutum HOM05D007792 ORTHO05D009931 8.2e-16 86.7 56 82.1
Solyc00g180440.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.1e-15 84.7 56 80.4
Gohir.A11G230404 Gossypium hirsutum HOM05D007792 ORTHO05D009931 4.1e-15 84.3 56 80.4
Gohir.A12G229400 Gossypium hirsutum HOM05D007792 ORTHO05D009931 4.1e-15 84.3 56 78.6
PSO548G0123 Papaver somniferum HOM05D007792 ORTHO05D009931 1.2e-14 82.8 56 75.0
Solyc11g063440.3 Solanum lycopersicum HOM05D007792 ORTHO05D009931 1.2e-14 82.8 57 77.2
Gohir.A02G053101 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.4e-14 81.3 56 76.8
Solyc11g063660.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.4e-14 81.3 69 66.7
Solyc11g063720.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.4e-14 81.3 69 66.7
HanXRQChr01g0020291 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQChr04g0094291 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQChr04g0095111 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQChr10g0283611 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQChr10g0284301 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQChr10g0318141 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQChr11g0326891 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
HanXRQCPg0580101 Helianthus annuus HOM05D007792 ORTHO05D009931 5.9e-14 80.5 56 75.0
DCAR_032507 Daucus carota HOM05D007792 ORTHO05D009931 7.7e-14 80.1 56 76.8
Oeu028775.1 Olea europaea HOM05D007792 ORTHO05D009931 7.7e-14 80.1 56 75.0
Oeu058366.1 Olea europaea HOM05D007792 ORTHO05D009931 7.7e-14 80.1 56 75.0
RcHm_v2.0_CPg0502001 Rosa chinensis HOM05D007792 ORTHO05D009931 2.2e-13 78.6 56 73.2
Phvul.002G090500 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 2.9e-13 78.2 57 73.7
Oeu053978.1 Olea europaea HOM05D007792 ORTHO05D009931 3.8e-13 77.8 56 73.2
Glyma.12G232100 Glycine max HOM05D007792 ORTHO05D009931 5.0e-13 77.4 66 63.6
Gorai.011G046100 Gossypium raimondii HOM05D007792 ORTHO05D009931 5.0e-13 77.4 56 73.2
Nn021s41529 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.4e-12 75.9 59 71.2
Nn6g32081 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.4e-12 75.9 59 71.2
SalBow1G1024 Salvia bowleyana HOM05D007792 ORTHO05D009931 1.4e-12 75.9 56 71.4
CAN.G1148.9 Capsicum annuum HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 73.2
CAN.G2018.13 Capsicum annuum HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 73.2
CAN.G438.83 Capsicum annuum HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 73.2
HanXRQChr02g0052571 Helianthus annuus HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 69.6
Sed0001088 Sechium edule HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 69.6
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 69.6
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 2.5e-12 75.1 56 69.6
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 3.2e-12 74.7 56 73.2
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 4.2e-12 74.3 56 67.9
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 4.2e-12 74.3 56 67.9
MELO3C028123.2 Cucumis melo HOM05D007792 ORTHO05D009931 4.2e-12 74.3 56 67.9
AL2G21630 Arabidopsis lyrata HOM05D007792 ORTHO05D009931 7.2e-12 73.6 55 70.9
ATCG00660 Arabidopsis thaliana HOM05D007792 ORTHO05D009931 7.2e-12 73.6 55 70.9
CARHR282170 Cardamine hirsuta HOM05D007792 ORTHO05D009931 7.2e-12 73.6 55 70.9
Sc09g0009720 Simmondsia chinensis HOM05D007792 ORTHO05D001488 9.4e-12 73.2 47 80.9
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.6e-11 72.4 56 71.4
Lalb_Chr07g0192061 Lupinus albus HOM05D007792 ORTHO05D009931 2.1e-11 72.0 50 72.0
Lalb_Chr08g0237911 Lupinus albus HOM05D007792 ORTHO05D009931 2.1e-11 72.0 50 72.0
BNapus_Darmor_BZH_scaffold_287p00200 Brassica napus HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
C02p43590 Brassica napus HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
C06p22950 Brassica napus HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
BolSC29t60477H Brassica oleracea HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
BolSC29t60598H Brassica oleracea HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
BolSC47t61086H Brassica oleracea HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
BraSC138t45565Z Brassica rapa HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
BraSC25t45855Z Brassica rapa HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
BraSC58t46432Z Brassica rapa HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
SGA_v2.0_scaffold479G52248 Striga asiatica HOM05D007792 ORTHO05D009931 6.1e-11 70.5 55 67.3
Lalb_Chr23g0274331 Lupinus albus HOM05D007792 ORTHO05D009931 1.8e-10 68.9 54 68.5
BolC2t08921H Brassica oleracea HOM05D007792 ORTHO05D009931 3.0e-10 68.2 55 65.5
Medtr4g034720 Medicago truncatula HOM05D007792 ORTHO05D009931 6.7e-10 67.0 50 68.0
Medtr7g085940 Medicago truncatula HOM05D007792 ORTHO05D009931 6.7e-10 67.0 50 68.0
BolC6t36199H Brassica oleracea HOM05D007792 ORTHO05D009931 1.1e-09 66.2 55 63.6
Sc22g0003450 Simmondsia chinensis HOM05D002194 ORTHO05D002840 1.1e-09 66.2 67 58.2
Aqoxy2G00943 Aquilegia oxysepala HOM05D007792 ORTHO05D009931 2.0e-09 65.5 53 66.0
CARHR287410 Cardamine hirsuta HOM05D007792 ORTHO05D009931 2.0e-09 65.5 65 61.5
LjContig00318g0025275 Lotus japonicus HOM05D007792 ORTHO05D009931 2.5e-09 65.1 60 61.7
Sed0005117 Sechium edule HOM05D007792 ORTHO05D009931 3.3e-09 64.7 51 64.7
Gohir.D01G169022 Gossypium hirsutum HOM05D007792 ORTHO05D009931 4.3e-09 64.3 56 67.9
Gorai.002G210300 Gossypium raimondii HOM05D007792 ORTHO05D009931 4.3e-09 64.3 56 67.9
C04p42970 Brassica napus HOM05D007792 ORTHO05D009931 5.7e-09 63.9 55 63.6
Nitab4.5_0007104g0100 Nicotiana tabacum HOM05D007792 ORTHO05D009931 1.7e-08 62.4 41 73.2
BraSC58t46493Z Brassica rapa HOM05D007792 ORTHO05D009931 2.2e-08 62.0 57 61.4
arahy.Tifrunner.gnm1.ann1.H056B9 Arachis hypogaea HOM05D007792 ORTHO05D009931 3.7e-08 61.2 46 71.7
arahy.Tifrunner.gnm1.ann1.4Z8JUD Arachis hypogaea HOM05D007792 ORTHO05D009931 4.8e-08 60.8 48 68.8
Glyma.01G201700 Glycine max HOM05D007792 ORTHO05D009931 6.3e-08 60.5 72 51.4
Duzib071G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 1.1e-07 59.7 42 69.0
Duzib233G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 1.1e-07 59.7 42 69.0
Duzib237G0004 Durio zibethinus HOM05D000274 ORTHO05D002552 1.1e-07 59.7 42 69.0
Duzib253G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 1.1e-07 59.7 42 69.0
Haze_24215 Corylus avellana HOM05D002400 ORTHO05D002568 2.0e-06 55.5 46 54.3


User provided reference genes

Program Settings