Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1355.5 692 100.0
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1191.0 698 85.7
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1140.2 695 82.7
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1139.4 690 83.2
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1133.6 695 82.9
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1129.4 695 81.9
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1124.4 697 81.9
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1122.5 696 81.5
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1114.8 695 80.7
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1114.4 690 81.6
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1113.6 695 80.9
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1112.1 695 80.9
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1112.1 697 81.2
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 0.0e+00 1107.4 690 81.2
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1105.9 690 80.6
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1105.5 692 80.5
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1104.7 725 78.5
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1098.2 697 80.5
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1095.9 693 80.1
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1095.5 697 80.5
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1094.7 691 79.7
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1094.3 697 80.6
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1094.3 743 76.4
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1093.2 693 79.8
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1092.8 690 80.3
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 0.0e+00 1092.0 694 80.5
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1090.9 693 80.1
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1090.1 691 79.0
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1088.6 697 79.8
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 0.0e+00 1088.2 696 78.7
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1088.2 697 80.2
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1085.9 697 79.9
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 0.0e+00 1085.1 693 79.1
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 0.0e+00 1083.2 691 80.5
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1082.0 698 79.1
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1079.7 692 79.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 0.0e+00 1078.5 695 78.7
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1075.1 691 78.7
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 9.5e-312 1073.2 692 78.3
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.9e-311 1072.0 692 78.6
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 5.7e-311 1070.5 697 78.9
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 9.5e-311 1069.7 690 77.7
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 693 78.9
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 691 79.2
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 3.6e-310 1067.8 696 77.6
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 8.8e-309 1063.1 696 76.9
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 1.5e-308 1062.4 691 77.0
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 2.0e-308 1062.0 696 77.3
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 1.3e-307 1059.3 681 79.9
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.2e-307 1058.5 691 77.3
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.8e-306 1055.4 693 78.4
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 2.4e-306 1055.0 740 73.9
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 5.4e-306 1053.9 696 76.3
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 9.1e-306 1053.1 719 73.0
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 9.1e-306 1053.1 691 77.1
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 691 76.7
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 2.9e-304 1048.1 691 76.6
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 1.1e-303 1046.2 696 76.3
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.5e-303 1045.0 695 77.0
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 8.0e-302 1040.0 712 75.8
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 9.8e-300 1033.1 648 81.2
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 3.1e-298 1028.1 690 75.9
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 5.4e-298 1027.3 802 67.6
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.9e-296 1021.5 695 75.3
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 4.2e-295 1017.7 690 75.9
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 7.2e-295 1016.9 695 74.2
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 7.2e-295 1016.9 691 76.0
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 1.2e-294 1016.1 690 76.1
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 8.0e-294 1013.4 691 75.1
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 8.9e-293 1010.0 691 75.3
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 8.9e-293 1010.0 691 74.8
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.5e-292 1009.2 691 75.4
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.5e-292 1009.2 693 75.0
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 2.0e-292 1008.8 691 75.1
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 5.7e-292 1007.3 691 75.0
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 5.7e-292 1007.3 691 75.0
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.1e-290 1003.0 688 75.1
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 3.2e-290 1001.5 690 74.9
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 7.8e-289 996.9 691 73.8
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 1.5e-287 992.6 691 74.1
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.5e-287 992.6 690 74.6
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 4.3e-287 991.1 693 72.7
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 1.6e-286 989.2 690 72.8
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 5.8e-276 954.1 701 69.9
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 9.2e-274 946.8 1195 48.2
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.4e-266 922.9 688 69.5
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 3.2e-266 921.8 554 83.9
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 4.6e-265 917.9 691 68.9
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 8.7e-248 860.5 778 60.9
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 2.0e-244 849.4 717 61.9
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 7.1e-242 840.9 580 74.7
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 2.4e-237 825.9 518 80.5
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 9.0e-237 823.9 719 59.1
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.5e-223 780.0 471 81.5
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 4.1e-221 771.9 511 76.1
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.6e-217 760.0 519 73.6
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.1e-210 737.3 706 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.9e-210 736.5 642 59.2
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 4.2e-194 682.2 414 80.2
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 5.6e-146 522.3 707 43.3
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.4e-144 517.7 710 42.7
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 7.3e-138 495.4 703 41.0
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.6e-129 467.6 697 44.6
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 7.9e-124 448.7 264 85.6
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.1e-122 444.9 691 43.8
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 8.4e-118 428.7 274 80.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 2.3e-115 420.6 478 48.5
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.9e-112 409.1 658 43.3
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.3e-110 404.8 232 85.3
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.2e-100 371.7 436 51.4
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.0e-91 342.0 247 72.1
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 3.3e-90 337.0 680 36.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.3e-81 308.5 223 73.1
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 6.5e-78 296.2 293 57.7
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 5.0e-70 270.0 203 71.9
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 3.1e-64 250.8 167 72.5
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 2.2e-49 201.4 143 75.5
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 2.2e-49 201.4 143 75.5
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 2.2e-41 174.9 101 80.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 4.1e-40 170.6 125 75.2
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 6.6e-30 136.7 117 59.0
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 5.2e-27 127.1 84 67.9
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 9.3e-24 116.3 216 40.3
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.7e-17 95.5 64 76.6
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.4e-16 91.7 84 64.3
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 4.6e-15 87.4 153 36.6


User provided reference genes

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