Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 2325.8 1205 100.0
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1298.1 1188 60.1
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 0.0e+00 1256.9 1185 58.4
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1256.1 1195 57.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1251.1 1187 57.9
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1251.1 1213 57.6
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1240.7 1211 56.2
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1221.8 1194 56.8
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1219.5 1203 56.4
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1217.2 1200 56.0
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1216.8 1213 56.6
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1215.3 1209 55.8
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1213.4 1197 55.9
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1210.3 1200 55.6
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1208.0 1207 55.6
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1206.8 1193 56.3
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1203.0 1135 58.8
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1199.1 1209 55.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1198.7 1195 55.9
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1198.7 1200 56.5
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1175.2 1209 54.8
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1168.7 1196 55.4
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1139.0 1179 55.4
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1138.6 1196 54.3
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1133.2 1134 55.6
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1118.6 1211 52.3
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1108.2 1196 53.6
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1102.4 1209 52.2
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1099.3 1218 51.6
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1096.3 1185 52.9
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1082.8 1188 51.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1082.4 1195 52.1
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1082.0 1188 51.3
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1078.5 1203 50.5
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 0.0e+00 1077.8 1197 52.0
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 8.2e-312 1074.7 1145 53.8
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 9.9e-311 1070.5 1207 51.0
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.2e-310 1070.1 1220 50.7
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 2.5e-306 1055.8 1334 48.3
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 7.1e-306 1054.3 1189 50.6
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.7e-305 1052.4 1192 51.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.2e-297 1026.9 1163 51.1
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 4.6e-297 1025.0 1191 49.1
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 7.4e-295 1017.7 1188 49.0
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.8e-294 1015.8 1191 50.1
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.8e-294 1015.8 1191 50.1
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.2e-292 1010.4 1092 51.8
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.5e-292 1010.0 1148 51.4
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 1.4e-290 1003.4 1327 47.4
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 7.2e-290 1001.1 1188 50.3
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 2.5e-287 992.6 1181 50.4
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 3.3e-287 992.3 1191 50.1
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 4.3e-287 991.9 1225 47.8
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.1e-285 987.3 1213 48.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 2.4e-285 986.1 1175 49.3
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 9.1e-285 984.2 1184 49.7
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.3e-283 980.3 1185 50.5
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.3e-283 980.3 1188 49.3
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 7.9e-281 971.1 1201 48.5
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 4.8e-278 961.8 1096 50.5
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 8.2e-278 961.1 1096 50.5
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.2e-275 953.0 859 61.2
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 6.5e-275 951.4 1093 50.0
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.5e-274 950.3 1335 44.0
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 3.7e-270 935.6 1012 51.5
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.2e-268 930.6 1215 44.8
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.2e-268 930.6 1149 49.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.6e-268 930.2 1213 47.0
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 2.2e-262 909.8 1102 48.6
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 9.1e-261 904.4 1100 48.5
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.3e-248 863.2 1102 47.0
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 4.3e-242 842.4 1149 46.6
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 4.4e-239 832.4 1198 42.2
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.7e-238 830.5 1168 45.0
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 2.0e-231 807.0 1246 42.3
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 5.1e-227 792.3 851 53.6
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 6.2e-217 758.8 904 51.3
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.2e-215 754.6 1010 46.6
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.5e-207 727.6 844 50.1
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 5.8e-199 699.1 868 47.2
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.2e-183 648.3 947 43.6
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.3e-177 628.2 660 52.9
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.6e-177 627.9 973 40.7
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 2.2e-174 617.5 1152 36.4
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 3.6e-172 610.1 594 54.9
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 7.4e-162 575.9 506 61.7
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 3.8e-158 563.5 1190 34.9
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.3e-153 548.5 673 47.3
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.1e-152 545.4 602 53.2
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.7e-150 538.1 572 51.2
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.1e-149 535.4 771 41.1
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 5.7e-146 523.1 583 53.3
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-136 491.9 489 56.6
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 1.6e-135 488.4 1172 32.5
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 1.0e-134 485.7 612 47.4
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 3.0e-126 457.6 554 48.6
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 2.4e-120 438.0 576 45.1
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.3e-105 389.0 503 46.1
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 8.7e-94 349.7 785 33.6
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 7.6e-82 310.1 380 47.1
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 2.3e-78 298.5 428 42.5
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.2e-74 286.2 423 41.4
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 1.3e-70 272.7 258 60.5
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 2.0e-58 232.3 1200 25.0
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.6e-58 231.9 255 51.4
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 5.9e-58 230.7 167 69.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 2.7e-55 221.9 165 71.5
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.4e-53 214.5 258 46.1
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 4.1e-51 208.0 350 35.7
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.5e-48 197.6 175 61.7
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.2e-44 185.7 248 42.7
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 3.1e-43 181.8 239 39.3
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.6e-42 178.7 238 46.2
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 8.5e-41 173.7 598 30.4
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.5e-40 172.9 134 64.9
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.5e-40 172.2 248 43.1
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 3.3e-37 161.8 170 55.3
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.8e-36 158.7 123 63.4
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 4.7e-31 141.4 1158 20.6
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.8e-27 129.4 251 32.7
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 2.7e-26 125.6 109 64.2
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 2.1e-23 115.9 142 43.0
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-22 113.2 102 61.8
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.2e-22 111.3 90 63.3
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 8.3e-20 104.0 96 56.2
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 8.3e-20 104.0 72 72.2
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.1e-19 101.7 70 68.6
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.1e-19 101.7 86 58.1
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.9e-18 97.8 99 50.5
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-17 96.7 179 34.6
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 3.6e-15 88.6 112 47.3
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.0e-14 87.0 83 57.8
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.4e-14 86.7 107 44.9
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.8e-14 86.3 87 49.4
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.0e-14 85.1 123 46.3
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.2e-14 84.7 87 48.3
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.0e-13 82.8 94 57.4
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 4.9e-12 78.2 97 48.5
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.7e-10 72.4 62 54.8
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.6e-10 71.6 64 60.9
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 6.0e-10 71.2 88 40.9
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.3e-09 69.3 73 60.3
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.6e-09 67.8 76 46.1


User provided reference genes

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