Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 3.7e-91 338.2 172 100.0
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 4.3e-71 271.6 166 77.7
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.6e-70 269.6 167 78.4
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 4.7e-70 268.1 166 76.5
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.4e-69 266.5 166 78.9
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.3e-69 265.8 164 80.5
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.1e-69 265.4 169 76.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.1e-69 265.4 166 79.5
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 4.0e-69 265.0 166 75.3
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 5.2e-69 264.6 164 79.9
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 6.8e-69 264.2 166 78.9
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 6.8e-69 264.2 166 76.5
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.5e-68 263.1 166 77.7
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.4e-68 261.9 164 79.9
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 3.4e-68 261.9 167 77.8
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 7.6e-68 260.8 164 79.3
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.7e-67 259.6 164 79.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.8e-67 258.5 164 78.0
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 4.9e-67 258.1 166 76.5
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.1e-66 256.9 166 75.9
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.4e-66 255.8 166 74.7
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.2e-66 255.4 166 75.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.2e-66 255.4 167 75.4
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 4.1e-66 255.0 166 74.7
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.1e-66 255.0 166 74.7
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.1e-66 255.0 166 74.7
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 4.1e-66 255.0 166 74.7
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 5.4e-66 254.6 166 75.9
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.6e-65 253.1 168 74.4
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 2.1e-65 252.7 166 73.5
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 3.5e-65 251.9 166 75.9
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.6e-65 251.5 166 74.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.0e-64 250.4 163 76.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.0e-64 250.4 168 73.8
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.7e-64 249.6 168 73.2
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-64 249.2 166 74.1
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-64 249.2 166 74.1
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-64 249.2 166 74.1
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.3e-64 249.2 164 74.4
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 5.1e-64 248.1 166 71.7
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 8.6e-64 247.3 166 72.3
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.1e-63 246.9 164 73.2
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.1e-63 246.9 167 73.1
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.1e-63 246.9 166 72.3
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.5e-63 246.5 167 72.5
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 73.5
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.5e-63 245.7 167 71.3
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.5e-63 245.7 165 72.7
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 4.3e-63 245.0 166 72.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 4.3e-63 245.0 166 69.3
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 4.3e-63 245.0 162 73.5
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-62 243.4 172 70.9
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 71.1
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 74.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 2.8e-62 242.3 166 74.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.6e-62 241.9 192 66.1
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 4.7e-62 241.5 169 70.4
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.1e-61 240.4 162 73.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 68.1
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 4.0e-61 238.4 166 69.9
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.0e-61 238.4 167 73.1
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 4.0e-61 238.4 166 69.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 6.9e-61 237.7 162 71.0
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.9e-61 237.7 166 69.9
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 9.0e-61 237.3 172 68.6
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-60 236.9 154 76.0
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 69.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 4.4e-60 235.0 166 71.1
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.8e-60 234.6 190 63.2
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 9.9e-60 233.8 166 69.3
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.3e-59 233.4 186 64.0
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 68.1
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 2.2e-59 232.6 137 81.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 2.2e-59 232.6 149 76.5
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.2e-59 232.6 168 66.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.9e-59 232.3 153 72.5
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.9e-59 232.3 168 67.3
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 6.4e-59 231.1 203 61.1
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 8.4e-59 230.7 159 73.0
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 7.8e-57 224.2 138 73.9
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-55 220.3 191 59.7
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.1e-55 220.3 166 63.9
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.3e-55 217.6 164 64.0
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 7.3e-55 217.6 166 66.3
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.3e-54 216.9 165 63.0
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 8.1e-54 214.2 165 61.8
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 8.1e-54 214.2 166 58.4
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.4e-53 213.4 173 59.0
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.4e-53 212.6 163 63.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 5.3e-53 211.5 139 71.2
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.6e-52 207.6 128 75.0
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.2e-51 206.1 164 57.9
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.9e-51 205.7 164 57.9
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 3.8e-51 205.3 164 57.3
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 3.8e-51 205.3 164 57.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.4e-50 203.4 140 67.1
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.4e-50 202.6 174 60.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.2e-50 202.2 137 67.9
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 9.3e-50 200.7 153 60.1
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 9.3e-50 200.7 164 56.7
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 3.5e-49 198.7 136 68.4
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-48 196.4 167 55.7
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.3e-48 196.1 116 81.0
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 3.0e-48 195.7 127 73.2
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.9e-48 195.3 165 58.2
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.1e-47 193.7 164 55.5
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-47 193.4 167 53.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-47 193.4 167 54.5
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.6e-47 191.4 167 54.5
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.6e-46 189.9 136 62.5
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.1e-45 185.7 118 73.7
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.1e-45 185.7 164 52.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 5.3e-45 184.9 126 65.1
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.6e-44 182.6 122 70.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.4e-44 182.2 116 75.9
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 9.9e-44 180.6 121 76.0
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 4.9e-43 178.3 116 75.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 8.4e-43 177.6 116 73.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 3.5e-41 172.2 138 64.5
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.9e-37 157.9 162 51.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 4.9e-35 151.8 166 48.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.1e-34 150.6 118 59.3
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-34 150.6 107 68.2
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.8e-32 143.3 128 60.2
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.8e-32 143.3 166 46.4
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.0e-32 142.5 118 60.2
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 8.7e-32 141.0 146 51.4
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.5e-31 140.2 118 55.1
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.7e-30 135.6 128 59.4
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 8.2e-30 134.4 163 45.4
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.2e-28 130.6 132 50.8
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-26 124.0 75 76.0
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.4e-26 123.6 146 43.2
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.6e-25 120.2 90 65.6
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.3e-24 116.3 166 45.8
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.5e-23 113.6 71 73.2
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.9e-23 113.2 102 53.9
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 7.4e-23 111.3 70 77.1
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.3e-21 105.1 99 53.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.5e-20 102.1 160 37.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 6.5e-19 98.2 57 73.7
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 2.5e-18 96.3 74 56.8
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.5e-18 96.3 74 56.8
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.5e-18 96.3 74 56.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.2e-18 95.9 75 65.3
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 6.1e-17 91.7 75 69.3
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 8.2e-14 81.3 59 61.0
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.0e-11 74.3 54 74.1
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-11 73.9 50 70.0
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.3e-11 73.9 61 52.5
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-11 73.6 54 66.7
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 2.2e-11 73.2 49 71.4
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.1e-10 70.9 53 64.2
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 4.4e-07 58.9 48 64.6
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 3.7e-06 55.8 38 63.2


User provided reference genes

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