Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.2e-133 478.0 241 100.0
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.2e-97 359.4 241 80.9
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 9.5e-85 317.4 241 65.6
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 4.7e-84 315.1 241 65.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.8e-83 313.2 252 62.7
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 5.2e-83 311.6 241 67.6
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 9.9e-82 307.4 241 63.9
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.2e-81 306.2 241 64.3
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.9e-81 305.8 241 62.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.9e-81 305.8 241 63.9
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 8.4e-81 304.3 241 63.1
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 8.4e-81 304.3 241 64.3
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.4e-80 302.8 243 62.1
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 7.1e-80 301.2 241 64.3
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.6e-79 300.1 241 66.4
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.7e-79 299.3 241 63.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.7e-78 296.6 243 63.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.3e-78 296.2 241 60.6
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.3e-78 296.2 242 63.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.0e-78 295.8 242 61.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.1e-78 295.0 241 63.1
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.1e-78 295.0 241 62.2
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 6.6e-78 294.7 249 64.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.6e-78 294.3 242 62.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.5e-77 293.5 241 60.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.9e-77 293.1 241 63.1
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.3e-77 292.4 241 60.2
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.3e-77 292.4 241 59.8
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 5.6e-77 291.6 242 61.6
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.3e-77 291.2 238 60.5
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.1e-76 287.7 229 71.6
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.8e-75 286.6 241 62.7
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 4.0e-75 285.4 241 59.8
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 6.8e-75 284.6 241 61.0
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 4.4e-74 282.0 241 61.4
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.8e-73 278.9 241 60.6
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 3.8e-73 278.9 241 60.6
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 8.4e-73 277.7 242 59.1
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.4e-72 276.9 240 60.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.9e-72 276.6 241 58.9
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 3.2e-72 275.8 241 58.5
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 4.2e-72 275.4 241 59.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 7.1e-72 274.6 241 60.6
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.2e-71 273.9 241 59.8
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.6e-71 271.9 238 57.6
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.6e-71 271.9 238 57.6
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 6.0e-71 271.6 220 60.5
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.8e-71 271.2 241 58.5
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 7.8e-71 271.2 241 60.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 7.8e-71 271.2 241 58.9
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.0e-70 270.8 241 58.1
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.7e-70 270.0 241 60.2
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.7e-70 270.0 241 58.5
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.9e-70 268.9 241 59.3
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 5.1e-70 268.5 241 57.7
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 6.6e-70 268.1 241 59.8
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 6.6e-70 268.1 241 59.3
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 6.6e-70 268.1 243 56.8
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 6.6e-70 268.1 241 58.1
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 6.6e-70 268.1 240 58.3
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 8.7e-70 267.7 248 56.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 4.3e-69 265.4 242 57.4
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.6e-69 265.0 244 56.1
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 5.6e-69 265.0 242 59.1
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 5.6e-69 265.0 246 54.9
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 7.3e-69 264.6 243 55.6
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 9.6e-69 264.2 244 56.6
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.3e-68 263.8 245 55.1
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 2.1e-68 263.1 241 57.3
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.8e-68 261.9 242 57.4
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 4.8e-68 261.9 241 58.5
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.8e-67 260.0 248 54.0
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 4.0e-67 258.8 242 56.6
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 4.0e-67 258.8 241 56.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 5.3e-67 258.5 244 54.5
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-66 256.9 246 53.7
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.5e-66 256.9 248 53.6
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.0e-66 256.5 242 55.8
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 5.8e-66 255.0 245 52.7
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.8e-66 255.0 246 53.3
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 9.9e-66 254.2 241 56.0
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.7e-65 253.4 241 56.8
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.9e-65 252.7 241 57.7
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 3.8e-65 252.3 241 56.0
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 3.2e-64 249.2 242 57.9
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.2e-63 247.3 220 57.7
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 4.6e-63 245.4 241 53.9
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 6.0e-63 245.0 241 56.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 6.0e-63 245.0 202 60.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.0e-62 244.2 249 53.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.3e-62 243.8 242 53.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.7e-62 243.4 242 55.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.0e-62 242.7 248 52.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 6.6e-62 241.5 252 51.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.1e-61 240.7 248 52.8
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.9e-61 240.0 246 53.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.1e-60 236.5 247 50.2
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 3.6e-60 235.7 242 52.5
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 7.6e-58 228.0 243 53.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.2e-57 226.5 231 55.4
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.9e-57 226.1 241 51.9
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.4e-57 224.6 168 66.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.1e-56 224.2 225 52.0
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 2.4e-56 223.0 220 55.0
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.6e-55 220.3 242 51.7
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.1e-55 219.9 241 49.4
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.5e-55 219.2 203 54.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 3.0e-54 216.1 230 51.3
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.9e-54 215.7 241 48.1
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 8.7e-54 214.5 203 56.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.5e-53 213.0 253 47.0
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.3e-53 212.6 241 46.9
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 3.7e-52 209.1 244 48.0
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 6.2e-52 208.4 206 54.4
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.2e-52 208.4 241 46.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 6.2e-52 208.4 252 46.8
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.4e-51 207.2 198 55.1
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.1e-51 206.1 241 46.9
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 4.0e-51 205.7 222 51.4
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.3e-51 205.3 241 49.4
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 6.9e-51 204.9 199 54.8
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.5e-50 202.2 245 47.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 8.4e-49 198.0 224 50.9
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 9.3e-48 194.5 223 49.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.3e-46 189.9 160 57.5
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 3.9e-46 189.1 208 47.6
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 8.7e-46 188.0 158 59.5
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 5.7e-45 185.3 224 48.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.5e-37 159.8 186 48.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.4e-35 153.3 200 45.0
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 7.7e-34 148.3 130 60.8
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 5.5e-32 142.1 272 34.9
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 3.3e-29 132.9 273 34.8
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.7e-28 130.6 252 34.1
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.2e-28 130.2 253 35.6
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 4.8e-28 129.0 179 43.0
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 5.5e-24 115.5 74 71.6
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.4e-22 110.9 136 41.9
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.8e-20 102.4 182 33.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 6.3e-20 102.1 81 58.0
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 4.2e-16 89.4 84 54.8
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.2e-13 81.3 204 32.4
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.6e-10 70.9 51 62.7
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.9e-10 68.9 71 50.7
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.7e-09 67.4 243 24.3
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.0e-09 65.9 86 44.2
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.2e-07 61.2 79 51.9
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.7e-07 60.1 59 44.1
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 5.2e-06 55.8 41 65.9


User provided reference genes

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