Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.7e-310 1068.5 572 100.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 3.8e-140 502.7 584 51.9
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 3.3e-136 489.6 594 50.2
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 9.1e-134 481.5 587 49.7
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.5e-133 480.7 589 48.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.4e-133 479.6 589 48.6
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.0e-132 478.0 571 49.9
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.8e-129 467.2 577 46.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 5.1e-129 465.7 611 47.5
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 9.7e-128 461.5 606 47.4
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.7e-127 460.7 550 50.7
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 4.8e-127 459.1 587 48.7
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 8.2e-127 458.4 572 48.1
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 1.2e-125 454.5 580 47.6
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.0e-125 453.8 578 48.4
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.7e-124 450.7 574 49.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 3.8e-124 449.5 583 48.4
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 3.8e-124 449.5 688 42.9
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 6.5e-124 448.7 585 48.2
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.2e-123 446.4 574 47.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-122 444.5 590 46.8
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 2.7e-122 443.4 559 50.4
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 5.2e-121 439.1 594 47.8
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.5e-120 437.6 576 48.6
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.4e-120 436.0 592 46.1
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 7.4e-120 435.3 567 46.2
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 9.7e-120 434.9 577 47.5
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.3e-119 434.5 580 46.4
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.7e-119 434.1 544 49.6
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 6.3e-119 432.2 578 45.8
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.3e-119 432.2 571 47.5
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 6.3e-119 432.2 571 47.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 5.3e-118 429.1 591 46.5
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 9.1e-118 428.3 583 46.0
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.2e-117 427.9 549 47.5
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.6e-117 426.8 575 46.8
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 3.5e-117 426.4 581 47.0
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.9e-116 423.3 601 45.1
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.8e-116 422.9 587 44.1
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.8e-116 422.9 588 45.7
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.9e-115 420.6 585 46.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.2e-115 419.9 555 47.9
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.5e-115 419.1 571 44.8
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 9.4e-115 418.3 597 43.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 9.4e-115 418.3 575 45.9
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.7e-114 416.8 574 44.8
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.6e-114 416.4 596 43.6
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 4.7e-114 416.0 581 46.3
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.4e-112 409.8 575 44.9
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 2.2e-111 407.1 585 44.6
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.2e-107 393.3 587 44.8
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 5.5e-107 392.5 612 40.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 4.7e-106 389.4 572 45.1
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.4e-105 387.9 603 41.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 5.7e-104 382.5 562 44.7
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 7.5e-104 382.1 508 45.9
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 3.7e-103 379.8 584 43.3
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 4.8e-103 379.4 577 42.5
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.4e-102 375.9 528 44.7
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 7.7e-101 372.1 573 42.9
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-100 371.7 504 46.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 9.5e-99 365.2 600 42.7
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.5e-99 365.2 600 42.7
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.2e-98 364.8 504 45.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.6e-98 364.4 507 44.8
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.8e-98 363.6 600 42.8
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 2.8e-98 363.6 608 41.6
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-97 360.1 611 42.1
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.2e-96 358.2 620 39.7
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 3.7e-95 353.2 542 42.6
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 5.4e-94 349.4 631 39.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.5e-93 346.7 578 41.0
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 3.5e-93 346.7 563 41.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 9.5e-91 338.6 570 40.9
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.8e-90 337.0 464 46.1
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 3.6e-90 336.7 540 41.5
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 8.0e-90 335.5 572 40.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.0e-89 335.1 314 59.2
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-88 331.3 501 43.3
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.0e-88 330.9 578 41.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 4.4e-88 329.7 572 40.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 7.5e-88 328.9 581 39.8
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 6.4e-87 325.9 573 40.0
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.9e-86 324.3 572 39.9
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.2e-86 323.6 576 40.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.6e-85 321.2 580 39.7
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 2.7e-85 320.5 574 40.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 3.5e-85 320.1 570 39.1
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.5e-85 320.1 586 41.1
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 6.0e-85 319.3 596 39.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 6.0e-85 319.3 492 42.3
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.0e-84 318.5 573 39.8
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-84 318.2 576 39.9
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-84 318.2 528 40.5
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 8.6e-84 315.5 571 38.9
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-83 314.3 611 39.0
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 5.6e-83 312.8 496 42.3
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 7.3e-83 312.4 565 40.5
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 7.3e-83 312.4 592 37.0
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.1e-82 310.8 571 39.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.1e-82 310.8 571 39.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.1e-82 310.8 571 39.1
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.8e-81 307.8 591 38.6
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.1e-81 307.0 567 39.2
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.9e-78 297.7 322 54.0
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.6e-77 293.1 290 57.6
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 6.0e-77 292.7 562 38.3
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 6.2e-74 282.7 587 34.8
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 8.9e-73 278.9 555 36.6
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.9e-71 273.9 563 37.3
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.2e-69 268.5 572 36.9
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.0e-69 266.2 432 43.5
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.2e-66 258.5 541 36.2
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 2.8e-66 257.3 223 59.2
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.4e-65 255.0 543 36.3
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-64 251.9 543 36.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-63 247.7 542 35.8
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.4e-63 246.1 501 38.7
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-62 245.0 543 35.9
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.1e-61 241.1 487 38.0
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.3e-60 238.4 510 37.1
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.1e-54 218.8 323 40.2
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 6.0e-53 213.0 417 37.2
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-48 198.7 518 33.2
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.3e-47 195.3 300 38.7
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.7e-47 194.9 459 34.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 8.4e-47 192.6 284 40.8
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-40 171.4 422 35.5
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.2e-39 167.9 319 40.4
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-36 159.1 331 37.5
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.8e-36 158.3 115 63.5
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 7.4e-35 152.9 351 35.3
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 6.2e-34 149.8 158 50.0
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.4e-30 138.7 385 32.7
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 9.3e-30 136.0 292 33.2
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 2.7e-29 134.4 126 52.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.8e-28 131.7 101 62.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 2.2e-26 124.8 405 30.9
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.5e-24 118.6 130 55.4
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.1e-22 112.5 187 38.0
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 7.2e-22 109.8 131 48.1
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.7e-20 103.2 118 46.6
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 2.0e-19 101.7 318 27.7
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 6.3e-18 96.7 89 48.3
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 6.3e-18 96.7 159 39.0
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.4e-17 94.7 101 50.5
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.5e-14 84.7 123 43.9
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 8.5e-07 59.7 62 58.1
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 1.5e-06 58.9 62 58.1
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 1.5e-06 58.9 62 58.1


User provided reference genes

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