Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.3e-241 839.3 424 100.0
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 3.6e-220 768.1 425 89.9
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 1.0e-219 766.5 424 89.6
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 2.3e-219 765.4 425 89.6
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 8.8e-219 763.5 425 89.4
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 2.6e-218 761.9 423 89.4
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 4.4e-218 761.1 425 89.9
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 5.7e-218 760.8 425 89.4
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.5e-218 760.4 425 89.4
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.3e-217 759.6 425 89.2
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 1.7e-217 759.2 425 88.5
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 2.2e-217 758.8 425 89.2
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.8e-217 758.4 425 89.2
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 4.9e-217 757.7 425 87.8
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.4e-216 756.1 425 88.5
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 1.4e-216 756.1 425 88.0
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.4e-216 756.1 425 89.2
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 1.8e-216 755.7 425 88.7
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.8e-216 755.7 425 87.8
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.1e-216 754.6 425 88.7
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 4.1e-216 754.6 425 88.2
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 5.4e-216 754.2 425 88.0
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 7.0e-216 753.8 425 88.5
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 9.2e-216 753.4 425 87.8
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 1.2e-215 753.1 425 87.3
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 2.0e-215 752.3 425 88.9
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.0e-214 750.0 425 88.0
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.3e-214 749.6 425 86.6
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.6e-214 746.9 424 86.6
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.5e-213 746.1 426 86.9
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 1.9e-213 745.7 425 86.8
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.3e-213 745.0 424 86.6
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 9.5e-213 743.4 425 86.6
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.2e-212 743.0 423 86.5
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.2e-212 743.0 426 86.4
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.2e-212 743.0 424 86.6
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.2e-212 743.0 425 85.6
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 2.8e-212 741.9 417 88.2
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 3.6e-212 741.5 423 86.5
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 3.6e-212 741.5 425 85.6
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 4.7e-212 741.1 425 86.1
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 4.7e-212 741.1 425 85.6
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 6.1e-212 740.7 425 86.6
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 8.0e-212 740.3 425 86.4
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 8.0e-212 740.3 425 86.1
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.4e-211 739.6 426 86.6
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.5e-210 736.1 425 85.6
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 3.4e-210 734.9 425 85.4
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 4.4e-210 734.6 422 87.0
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 3.7e-209 731.5 424 85.4
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 4.9e-209 731.1 421 86.0
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.9e-209 731.1 438 83.6
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 4.9e-209 731.1 425 84.9
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 4.9e-209 731.1 415 87.5
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.4e-208 729.6 438 84.0
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.4e-208 728.8 423 85.1
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 3.2e-208 728.4 425 85.4
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 4.1e-208 728.0 424 84.0
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.4e-208 727.6 414 87.2
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 9.2e-208 726.9 425 85.6
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 1.2e-207 726.5 449 82.4
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.6e-207 726.1 425 84.2
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.0e-207 725.7 425 86.4
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 5.9e-207 724.2 425 85.2
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.3e-206 723.0 425 84.9
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.3e-206 723.0 425 84.9
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 2.3e-206 722.2 425 83.8
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 6.6e-206 720.7 425 84.7
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 6.6e-206 720.7 425 84.5
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 8.6e-206 720.3 425 84.2
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-205 719.9 425 84.2
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-205 719.9 425 84.2
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 1.1e-205 719.9 425 84.5
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 1.5e-205 719.5 424 84.0
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.9e-205 719.2 425 84.0
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.5e-205 718.8 425 85.2
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 3.3e-205 718.4 423 84.2
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 4.3e-205 718.0 425 85.2
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 4.3e-205 718.0 425 84.5
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.1e-204 715.7 425 81.4
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.1e-204 715.7 425 84.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 3.6e-204 714.9 420 85.0
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 4.7e-204 714.5 420 84.8
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 1.1e-203 713.4 425 84.7
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.4e-203 713.0 425 82.6
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.3e-203 712.2 471 78.6
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 1.3e-201 706.4 424 81.1
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 4.9e-201 704.5 415 84.6
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.7e-199 698.7 413 85.5
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.0e-198 694.5 425 79.8
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 8.6e-198 693.7 425 80.5
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 8.6e-198 693.7 426 80.5
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 3.3e-197 691.8 420 81.2
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 5.6e-197 691.0 423 81.6
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 7.3e-197 690.6 423 81.6
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.2e-196 689.9 425 80.0
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.4e-195 686.4 424 81.8
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 2.9e-193 678.7 423 78.0
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 9.2e-192 673.7 425 80.2
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-191 670.6 419 78.8
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 3.9e-190 668.3 425 80.2
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 1.9e-189 666.0 422 76.3
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 3.6e-188 661.8 425 79.5
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 8.1e-188 660.6 425 79.8
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.1e-187 660.2 425 78.6
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.1e-187 660.2 423 75.7
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 6.8e-187 657.5 416 79.3
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.4e-186 655.2 433 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 3.2e-184 648.7 420 75.0
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.6e-183 644.8 423 77.8
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.3e-182 643.3 423 73.8
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 3.0e-182 642.1 413 79.9
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.9e-181 639.4 611 57.9
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.5e-181 639.0 418 78.2
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.2e-180 636.7 442 74.9
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 8.1e-180 634.0 401 80.5
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.5e-178 629.8 415 77.6
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.8e-177 625.2 475 70.7
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 4.9e-177 624.8 423 73.8
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 4.2e-176 621.7 364 84.1
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.0e-175 617.8 413 74.8
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-174 616.7 416 73.8
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 5.1e-174 614.8 425 71.5
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-173 613.2 406 75.1
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.3e-173 611.7 353 84.7
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 3.6e-172 608.6 411 74.9
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-169 599.7 413 74.1
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 1.4e-168 596.7 340 87.6
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 9.3e-168 594.0 344 84.9
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 3.5e-167 592.0 360 81.9
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.0e-166 590.5 351 84.6
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 2.5e-165 585.9 410 72.2
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.5e-165 585.9 432 69.9
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.2e-161 572.8 430 67.4
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 2.7e-159 565.8 415 71.6
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-158 562.0 403 69.7
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 8.2e-156 554.3 413 65.1
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.8e-155 553.1 313 87.5
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.7e-149 530.8 407 66.8
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.7e-142 508.1 418 64.4
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 1.1e-141 507.3 303 83.2
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 3.1e-139 499.2 422 60.4
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 9.4e-136 487.6 282 84.8
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.6e-133 479.6 286 81.1
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 2.5e-128 463.0 444 57.2
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.2e-128 462.2 436 56.9
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.1e-115 421.0 430 51.6
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 7.7e-114 414.8 237 86.5
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 4.5e-106 389.0 279 69.5
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.0e-102 377.9 432 47.2
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 8.0e-95 351.7 465 45.4
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 3.4e-85 319.7 171 91.8
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 4.9e-84 315.8 412 43.7
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.9e-84 315.8 199 79.4
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 8.3e-76 288.5 239 62.3
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 8.6e-73 278.5 168 79.8
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 5.8e-69 265.8 157 79.6
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 7.3e-64 248.8 166 73.5
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.3e-57 228.0 253 53.0
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 3.0e-57 226.9 161 72.0
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 3.9e-57 226.5 158 74.7
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 2.5e-35 154.1 96 78.1
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 2.5e-32 144.1 86 80.2
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 5.7e-32 142.9 86 80.2
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 8.5e-28 129.0 126 59.5
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 4.2e-27 126.7 233 35.2
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.7e-25 119.4 72 81.9
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 5.0e-20 103.2 61 78.7
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 1.9e-19 101.3 129 46.5
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 1.2e-18 98.6 94 58.5
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 3.0e-17 94.0 55 81.8
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 5.1e-17 93.2 168 38.1
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.5e-13 81.6 48 85.4
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 5.9e-13 79.7 55 67.3
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 8.5e-12 75.9 230 29.6
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 1.8e-09 68.2 47 72.3
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 2.6e-08 64.3 94 44.7
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 4.4e-08 63.5 70 52.9
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 3.7e-07 60.5 38 73.7
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 8.2e-07 59.3 42 69.0
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 1.4e-06 58.5 47 61.7
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 2.4e-06 57.8 44 68.2


User provided reference genes

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