Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.1e-173 613.2 307 100.0
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.1e-89 333.2 308 57.1
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.8e-88 330.1 322 58.7
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 4.0e-88 328.9 320 57.8
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 4.0e-88 328.9 315 58.7
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.2e-86 323.2 312 57.7
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.9e-86 322.8 320 56.9
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 1.9e-82 310.1 320 55.3
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 2.1e-81 306.6 320 55.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.7e-81 305.8 318 55.7
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.1e-80 304.3 314 55.7
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.0e-80 302.4 318 56.0
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 1.5e-79 300.4 321 55.8
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.3e-78 297.4 315 52.4
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.7e-78 297.0 317 55.5
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.7e-78 297.0 317 55.5
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 8.4e-78 294.7 321 55.5
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 4.2e-77 292.4 321 54.8
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.5e-77 292.0 326 52.1
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.5e-76 289.3 322 52.2
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 3.0e-75 286.2 329 53.8
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 3.0e-75 286.2 318 53.8
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 5.1e-75 285.4 323 52.6
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 5.1e-75 285.4 317 52.1
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 6.7e-75 285.0 320 50.9
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.5e-74 283.9 320 51.9
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 3.3e-74 282.7 310 52.3
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 5.7e-74 282.0 320 51.6
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 7.4e-74 281.6 284 54.9
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 9.6e-74 281.2 320 51.6
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.6e-73 280.4 311 54.3
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 2.1e-73 280.0 315 53.7
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 3.7e-73 279.3 311 51.1
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.7e-73 279.3 322 50.9
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 4.8e-73 278.9 325 52.6
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 3.1e-72 276.2 318 50.3
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 4.1e-72 275.8 318 50.6
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.1e-72 275.8 317 53.9
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 4.1e-72 275.8 324 51.2
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 5.3e-72 275.4 315 51.7
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 6.9e-72 275.0 318 49.7
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.2e-71 274.2 309 52.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-71 273.9 316 54.1
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 2.0e-71 273.5 331 50.5
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 2.0e-71 273.5 327 50.2
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 3.4e-71 272.7 317 53.6
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.4e-71 272.7 317 53.6
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.4e-71 272.7 317 53.6
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 5.9e-71 271.9 284 54.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.0e-70 271.2 291 54.6
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.7e-70 270.4 312 49.7
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 2.2e-70 270.0 314 52.2
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.9e-70 269.6 317 53.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.4e-69 267.3 320 50.9
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.5e-69 266.5 311 48.6
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 3.2e-69 266.2 342 49.1
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.2e-69 265.8 317 53.0
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 5.5e-69 265.4 277 54.5
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 9.3e-69 264.6 312 50.6
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 9.3e-69 264.6 318 51.3
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.6e-68 262.3 309 50.5
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 4.6e-68 262.3 318 51.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.6e-68 262.3 323 49.2
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.3e-67 260.8 317 48.9
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 2.3e-67 260.0 317 48.9
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 3.0e-67 259.6 316 49.4
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 6.7e-67 258.5 308 49.4
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.3e-66 255.8 312 49.0
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 5.7e-66 255.4 280 50.4
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 3.7e-65 252.7 314 49.4
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 4.8e-65 252.3 321 47.4
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 6.3e-65 251.9 321 48.9
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.4e-64 250.8 314 49.0
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.8e-64 250.4 340 46.5
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.3e-62 244.2 318 46.9
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.7e-62 243.8 306 48.7
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 8.5e-62 241.5 314 45.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.4e-61 240.7 319 46.7
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.1e-60 236.9 302 48.0
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 1.8e-59 233.8 316 44.9
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.0e-59 233.0 287 49.1
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.5e-58 230.7 284 48.2
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.5e-58 230.7 273 48.0
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.8e-57 226.5 313 46.3
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 8.2e-57 224.9 315 43.2
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 1.1e-56 224.6 310 45.2
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.1e-56 224.6 316 46.5
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.4e-56 223.4 285 48.1
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.3e-56 222.2 317 44.8
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 3.4e-55 219.5 320 43.1
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.4e-55 219.5 311 43.7
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 5.9e-55 218.8 306 44.1
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.9e-55 218.8 277 49.8
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.3e-54 217.6 321 43.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 2.2e-54 216.9 321 43.3
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.8e-54 216.1 320 44.7
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 3.8e-54 216.1 308 45.1
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 6.5e-54 215.3 304 43.8
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 8.5e-54 214.9 294 47.6
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 7.2e-53 211.8 312 43.6
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.6e-52 210.7 320 41.6
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 3.6e-52 209.5 303 43.2
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.8e-51 207.2 303 42.9
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 5.7e-50 202.2 267 46.1
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.7e-49 200.7 313 42.8
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 4.8e-49 199.1 311 43.4
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 7.0e-48 195.3 271 46.1
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 7.0e-48 195.3 281 41.3
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 9.1e-48 194.9 319 43.3
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 9.1e-48 194.9 307 40.4
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 2.0e-47 193.7 281 45.2
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.6e-47 193.4 266 44.4
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.5e-47 192.6 302 42.7
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 4.5e-47 192.6 308 39.9
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 5.9e-47 192.2 307 41.4
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 7.7e-47 191.8 266 45.1
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.7e-46 190.7 317 38.8
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.8e-46 189.5 303 39.6
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 5.0e-46 189.1 313 42.5
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.5e-45 187.6 309 39.2
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.5e-45 187.6 283 43.5
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 4.2e-45 186.0 315 42.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 5.5e-45 185.7 308 39.6
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 7.2e-45 185.3 314 41.7
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 9.4e-45 184.9 312 42.6
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.6e-44 184.1 309 40.5
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 1.6e-44 184.1 303 41.6
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 2.7e-44 183.3 320 38.8
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 3.6e-44 183.0 323 39.6
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 1.0e-43 181.4 275 42.5
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.3e-43 180.3 304 40.1
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 4.0e-43 179.5 305 37.7
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 8.8e-43 178.3 306 38.2
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 5.7e-42 175.6 307 39.4
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 5.7e-42 175.6 307 39.4
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.7e-41 174.1 245 44.1
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 2.2e-41 173.7 311 38.3
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 2.4e-40 170.2 255 40.8
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 5.3e-40 169.1 308 38.3
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 4.5e-39 166.0 336 36.9
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 5.9e-39 165.6 302 39.1
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 6.5e-38 162.2 315 35.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 4.2e-37 159.5 288 36.8
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 3.6e-36 156.4 251 42.6
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.0e-35 154.8 307 35.2
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.0e-35 154.8 304 37.2
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.0e-35 154.8 304 37.2
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 1.5e-34 151.0 318 35.8
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 5.7e-34 149.1 317 34.4
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 5.7e-34 149.1 317 34.7
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.8e-33 146.7 314 33.8
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.8e-33 146.7 314 33.8
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.7e-33 146.4 310 33.5
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.1e-32 143.3 311 33.8
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.6e-31 141.0 310 34.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.5e-31 139.8 181 48.1
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.5e-31 139.8 313 32.9
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.5e-29 134.4 261 35.6
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.9e-29 134.0 202 42.6
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 4.7e-28 129.4 297 32.3
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.8e-27 125.6 107 56.1
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 2.6e-26 123.6 244 33.6
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.8e-25 120.2 287 36.2
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.4e-24 115.9 358 27.7
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 7.0e-24 115.5 299 31.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 2.3e-22 110.5 267 34.1
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 5.0e-22 109.4 270 33.3
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.3e-17 94.7 296 28.4
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 5.4e-16 89.4 302 26.5
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 7.8e-15 85.5 94 45.7
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 3.9e-14 83.2 63 57.1
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 3.9e-14 83.2 63 57.1
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 5.0e-14 82.8 290 29.3
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.1e-13 81.6 242 29.8
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.5e-13 81.3 242 29.3
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 3.3e-13 80.1 65 55.4
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 3.3e-13 80.1 65 55.4
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 9.5e-13 78.6 95 44.2
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 6.2e-12 75.9 89 44.9
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 8.0e-12 75.5 268 28.0
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 4.4e-10 69.7 146 32.9
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.4e-08 64.7 305 24.3
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.4e-08 64.7 154 31.8


User provided reference genes

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