Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.1e-95 352.4 192 100.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.6e-37 160.2 208 47.1
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 1.6e-37 160.2 190 50.5
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 7.7e-37 157.9 158 53.8
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.7e-36 156.8 204 49.0
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.9e-35 153.3 174 47.1
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 8.0e-34 147.9 172 51.2
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.0e-33 147.5 164 51.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.8e-33 146.7 167 47.3
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.8e-33 146.7 172 50.0
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.0e-33 145.6 165 52.1
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.5e-32 143.7 183 47.0
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.5e-32 143.7 181 49.2
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.6e-32 142.9 169 47.9
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.4e-32 142.1 173 49.1
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.5e-32 141.4 173 49.1
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 7.5e-32 141.4 177 46.9
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 7.5e-32 141.4 196 44.4
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.3e-31 140.6 173 48.6
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.2e-31 139.8 195 47.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.7e-31 139.0 165 47.9
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.7e-31 139.0 187 47.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 6.3e-31 138.3 219 44.3
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 8.2e-31 137.9 162 50.0
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 8.2e-31 137.9 175 45.7
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.4e-30 137.1 210 44.3
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 2.4e-30 136.3 161 47.2
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 3.1e-30 136.0 194 46.4
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 5.3e-30 135.2 228 41.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 7.0e-30 134.8 194 45.4
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.2e-29 134.0 187 45.5
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.2e-29 134.0 194 43.3
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.0e-29 133.3 223 42.6
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.9e-29 131.7 169 46.2
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 5.9e-29 131.7 194 44.8
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.9e-28 129.4 165 47.3
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 1.5e-27 127.1 159 45.9
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 1.5e-27 127.1 171 43.9
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.9e-27 126.7 177 46.3
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.9e-27 126.7 195 42.6
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.9e-27 126.7 159 47.2
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.5e-27 126.3 166 42.8
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 3.2e-27 125.9 204 42.2
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 4.2e-27 125.6 172 45.9
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 4.2e-27 125.6 193 43.0
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 4.2e-27 125.6 194 43.3
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 4.2e-27 125.6 174 42.0
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 7.2e-27 124.8 161 46.0
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.4e-27 124.4 208 42.3
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.6e-26 123.6 185 41.6
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.7e-26 122.9 156 46.8
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.6e-26 122.5 208 41.8
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 4.7e-26 122.1 187 44.9
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 8.0e-26 121.3 222 38.7
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-25 120.9 208 41.8
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.8e-25 120.2 159 44.0
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 2.3e-25 119.8 155 42.6
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.0e-25 119.4 198 42.4
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 4.0e-25 119.0 164 45.1
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.0e-25 119.0 198 42.4
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.0e-25 119.0 165 41.8
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 6.8e-25 118.2 155 41.9
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 6.8e-25 118.2 154 45.5
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.2e-24 117.5 159 45.9
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.5e-24 117.1 187 40.1
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.5e-24 117.1 164 43.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.5e-24 117.1 171 43.9
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.0e-24 116.7 169 44.4
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 5.7e-24 115.2 185 41.1
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 7.5e-24 114.8 173 40.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 9.8e-24 114.4 168 43.5
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 9.8e-24 114.4 174 43.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.7e-23 113.6 183 41.0
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 2.2e-23 113.2 162 40.7
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 2.8e-23 112.8 170 39.4
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.8e-23 112.8 167 41.9
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 6.3e-23 111.7 174 37.4
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 8.3e-23 111.3 174 39.1
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 8.3e-23 111.3 178 38.2
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 8.3e-23 111.3 178 38.2
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 8.3e-23 111.3 170 38.8
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 3.1e-22 109.4 171 39.2
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 3.1e-22 109.4 158 43.0
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 4.1e-22 109.0 168 38.7
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 4.1e-22 109.0 178 37.1
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.1e-22 109.0 182 41.8
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 5.4e-22 108.6 184 43.5
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.2e-21 107.5 162 40.7
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.6e-21 107.1 186 43.5
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.6e-21 107.1 162 40.7
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.5e-21 105.9 179 39.7
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 3.5e-21 105.9 181 40.9
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 3.5e-21 105.9 166 38.6
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 5.9e-21 105.1 217 34.6
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 7.7e-21 104.8 154 40.3
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.0e-20 104.4 161 41.6
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.7e-20 103.6 164 43.3
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 2.3e-20 103.2 173 39.9
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 2.3e-20 103.2 173 38.7
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 3.8e-20 102.4 160 41.2
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 5.0e-20 102.1 151 40.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 6.6e-20 101.7 169 41.4
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.6e-20 101.3 207 35.3
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.5e-19 100.5 158 38.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.5e-19 99.8 176 38.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-18 97.1 216 33.8
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.8e-17 93.6 154 35.1
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 2.3e-17 93.2 153 39.9
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.3e-17 93.2 155 37.4
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.3e-17 93.2 159 35.2
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 3.0e-17 92.8 157 35.7
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 5.2e-17 92.0 155 36.8
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 6.8e-17 91.7 183 36.6
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 3.4e-16 89.4 163 33.1
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 9.8e-16 87.8 141 40.4
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 6.3e-15 85.1 213 31.9
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-14 83.6 106 48.1
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-14 83.6 106 48.1
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 4.1e-14 82.4 203 35.0
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.0e-13 80.1 149 40.9
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.9e-11 73.6 167 34.7
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-11 73.6 139 40.3
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.6e-11 72.0 141 33.3
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.5e-11 71.2 125 37.6
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 4.7e-10 68.9 68 48.5
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.3e-09 66.6 137 38.0
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 4.0e-09 65.9 82 50.0
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 6.8e-09 65.1 211 26.5
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 1.2e-08 64.3 75 48.0
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.2e-08 64.3 111 40.5
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.4e-08 62.8 118 39.0
CSS0041755 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.8e-08 62.0 42 69.0
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.8e-08 62.0 206 27.7
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.8e-08 62.0 206 27.7
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 1.7e-07 60.5 113 35.4
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 2.2e-07 60.1 53 50.9
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.9e-07 59.7 108 32.4
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.1e-06 57.8 114 36.0
Zm00001eb249910 Zea mays HOM05D057943 ORTHO05D049650 3.2e-06 56.2 57 43.9
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 7.0e-06 55.1 174 23.6


User provided reference genes

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