Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 9.3e-261 903.3 550 100.0
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 4.5e-138 495.7 572 59.8
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 2.5e-125 453.4 558 51.1
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 3.3e-125 453.0 566 49.8
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 3.7e-124 449.5 380 63.9
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 4.1e-123 446.0 550 55.6
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 5.3e-123 445.7 554 54.5
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-122 444.1 557 51.7
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 3.4e-122 443.0 570 49.6
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 4.5e-122 442.6 557 51.0
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 7.7e-122 441.8 555 51.5
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 7.7e-122 441.8 552 49.5
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 3.8e-121 439.5 558 49.3
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.4e-120 437.6 552 49.8
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 3.2e-120 436.4 584 49.5
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.2e-120 435.3 562 51.6
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.8e-118 430.6 380 63.9
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 3.9e-118 429.5 573 52.7
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 6.7e-118 428.7 386 63.0
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 5.7e-117 425.6 586 47.6
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.3e-116 424.5 549 49.0
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 3.7e-116 422.9 563 48.7
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.7e-116 422.9 563 48.7
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.8e-116 422.5 559 48.8
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-116 422.2 566 48.6
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.1e-115 421.4 392 62.8
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.4e-115 421.0 585 46.3
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.4e-115 421.0 559 48.5
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.8e-115 420.6 555 49.5
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.4e-115 420.2 382 62.6
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 3.1e-115 419.9 557 53.9
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 9.1e-115 418.3 383 61.1
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.4e-114 416.4 574 46.2
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.4e-114 416.4 346 66.2
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.0e-113 412.5 554 52.3
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 1.1e-112 411.4 574 46.7
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.4e-112 411.0 570 46.1
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.9e-112 410.6 552 49.5
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 2.5e-112 410.2 567 49.0
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 2.5e-112 410.2 567 49.0
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 7.2e-112 408.7 552 50.5
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 7.2e-112 408.7 552 50.5
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.2e-111 407.9 569 47.1
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 4.7e-111 406.0 553 48.3
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 7.9e-111 405.2 563 48.0
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.0e-110 404.8 380 61.6
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.8e-110 404.1 378 62.7
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.0e-110 403.3 550 48.4
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.1e-109 401.4 573 50.8
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.5e-109 401.0 407 57.2
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.3e-108 397.9 571 45.5
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 4.8e-108 396.0 578 49.1
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 3.1e-107 393.3 570 47.5
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 7.0e-107 392.1 387 57.4
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 3.5e-106 389.8 580 47.9
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 4.5e-106 389.4 598 53.0
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 5.9e-106 389.0 568 48.2
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.7e-105 387.5 577 46.3
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 2.2e-105 387.1 583 49.2
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 2.9e-105 386.7 568 46.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.1e-104 384.8 534 46.3
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.4e-104 384.4 554 47.3
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.9e-104 384.0 575 48.3
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.2e-103 381.3 575 47.0
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 2.7e-103 380.2 381 56.2
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 3.6e-103 379.8 582 45.7
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.0e-102 378.3 572 45.6
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.4e-102 377.9 378 58.5
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 8.8e-102 375.2 381 57.5
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.5e-101 374.4 587 45.7
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 3.3e-101 373.2 573 46.4
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 5.7e-101 372.5 375 57.9
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 7.4e-101 372.1 543 46.2
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 7.4e-101 372.1 278 70.9
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 9.7e-101 371.7 361 59.6
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.3e-100 371.3 566 47.5
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.2e-100 370.5 564 49.1
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 2.8e-100 370.2 389 56.8
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.1e-99 368.2 563 47.8
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 1.4e-99 367.9 389 57.6
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 2.4e-99 367.1 389 57.3
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 4.1e-99 366.3 395 55.9
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 5.3e-99 365.9 381 57.0
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.2e-98 364.8 565 44.2
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 1.6e-98 364.4 399 55.9
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 1.6e-98 364.4 393 56.0
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 1.6e-98 364.4 395 55.7
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 3.5e-98 363.2 563 46.0
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 5.9e-98 362.5 397 55.4
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.3e-97 361.3 394 55.6
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 2.9e-97 360.1 394 55.3
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 2.9e-97 360.1 394 55.3
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.8e-97 359.8 565 48.1
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.5e-96 357.1 385 54.3
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.6e-95 354.4 555 45.6
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.7e-95 353.6 374 55.3
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.1e-95 352.4 315 63.2
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.4e-94 351.3 574 45.1
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.0e-93 347.4 528 47.0
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.3e-93 346.7 382 53.9
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 7.5e-93 345.5 594 42.1
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.2e-92 344.0 400 53.2
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.2e-89 334.0 307 60.3
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 2.5e-88 330.5 387 51.9
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.5e-88 329.3 361 53.2
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 5.5e-88 329.3 389 53.0
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 5.5e-88 329.3 368 52.7
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 4.0e-86 323.2 345 54.5
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.5e-85 321.2 389 51.7
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 7.5e-85 318.9 381 53.5
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.1e-80 305.1 225 71.1
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.0e-58 229.6 140 77.1
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.5e-53 212.6 131 76.3
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 8.3e-52 209.1 378 38.6
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 4.6e-50 203.4 280 43.6
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 4.7e-47 193.4 320 40.3
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 8.1e-47 192.6 268 49.6
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 4.4e-45 186.8 258 47.7
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 1.3e-44 185.3 441 34.5
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.3e-40 170.6 107 76.6
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 1.3e-39 168.7 194 50.5
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 1.2e-34 152.1 318 38.7
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.4e-30 137.9 249 39.0
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 9.9e-29 132.5 244 40.6
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.2e-28 131.3 198 42.4
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 2.2e-28 131.3 198 42.4
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.4e-27 128.6 102 60.8
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.4e-27 128.6 102 60.8
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 2.4e-27 127.9 198 41.9
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 4.2e-27 127.1 114 61.4
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 6.9e-22 109.8 115 53.0
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.6e-15 88.6 148 45.3
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 2.1e-15 88.2 171 43.9
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.8e-15 87.0 62 67.7
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 5.3e-14 83.6 349 30.1
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 2.5e-11 74.7 192 27.6
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 8.7e-09 66.2 258 23.6
AT5G50250 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 5.7e-08 63.5 250 27.2
Rhsim03G0063700 Rhododendron simsii HOM05D000142 ORTHO05D007638 1.3e-07 62.4 210 24.3
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 2.2e-07 61.6 239 31.4
Pp3c1_20040 Physcomitrium patens HOM05D003377 ORTHO05D004080 2.8e-07 61.2 98 33.7
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 2.8e-07 61.2 166 30.7
Ca_19429_v3 Cicer arietinum L. HOM05D000142 ORTHO05D001253 3.7e-07 60.8 197 27.4
Prupe.2G007400 Prunus persica HOM05D000142 ORTHO05D008397 4.8e-07 60.5 213 26.8
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 4.8e-07 60.5 214 25.2
FAN01G1726 Fragaria x ananassa HOM05D000142 ORTHO05D008397 6.3e-07 60.1 205 27.3
FAN03G0216 Fragaria x ananassa HOM05D000142 ORTHO05D008397 6.3e-07 60.1 205 27.3
FAN06G2501 Fragaria x ananassa HOM05D000142 ORTHO05D008397 6.3e-07 60.1 205 26.8
Actinidia02973 Actinidia chinensis HOM05D006053 ORTHO05D008381 8.2e-07 59.7 179 27.9
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 1.1e-06 59.3 235 26.4
FvH4_7g00530 Fragaria vesca HOM05D000142 ORTHO05D008397 1.1e-06 59.3 205 26.8
PGR142G2322 Punica granatum HOM05D006053 ORTHO05D008381 1.1e-06 59.3 184 25.5
Sc20g0002520 Simmondsia chinensis HOM05D006053 ORTHO05D008381 1.4e-06 58.9 220 26.4
Gorai.001G063100 Gossypium raimondii HOM05D000142 ORTHO05D001253 2.4e-06 58.2 235 26.4
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.4e-06 58.2 197 28.4
arahy.Tifrunner.gnm1.ann1.JRYV00 Arachis hypogaea HOM05D006053 ORTHO05D008381 4.1e-06 57.4 229 25.3
Cfa024121 Carpinus fangiana HOM05D000285 ORTHO05D001253 4.1e-06 57.4 100 37.0
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.1e-06 57.4 197 28.4
MD07G1005200 Malus domestica HOM05D000142 ORTHO05D008397 4.1e-06 57.4 189 26.5
Sed0024116 Sechium edule HOM05D000285 ORTHO05D000241 4.1e-06 57.4 204 24.5
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.3e-06 57.0 197 27.9
Lalb_Chr06g0164221 Lupinus albus HOM05D006053 ORTHO05D008381 5.3e-06 57.0 155 29.7
MD02G1316800 Malus domestica HOM05D000142 ORTHO05D008397 5.3e-06 57.0 213 25.4
HPP92_006599 Vanilla planifolia HOM05D006053 ORTHO05D008381 5.3e-06 57.0 147 27.2
CiPaw.02G181100 Carya illinoinensis HOM05D006053 ORTHO05D008381 6.9e-06 56.6 170 27.1
Lj5g0015550 Lotus japonicus HOM05D006053 ORTHO05D008381 6.9e-06 56.6 221 25.3
Nitab4.5_0000101g0220 Nicotiana tabacum HOM05D000142 ORTHO05D001253 6.9e-06 56.6 228 25.4
THA.LOC104824082 Tarenaya hassleriana HOM05D006053 ORTHO05D008381 6.9e-06 56.6 269 22.7
arahy.Tifrunner.gnm1.ann1.AZ4556 Arachis hypogaea HOM05D006053 ORTHO05D008381 9.0e-06 56.2 216 25.5


User provided reference genes

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