Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 7.5e-139 497.3 268 100.0
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 4.1e-52 209.1 249 54.6
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.5e-43 179.5 235 51.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.5e-43 179.5 235 51.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 3.5e-43 179.5 233 50.6
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.3e-42 177.6 231 53.7
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.3e-42 177.6 233 50.2
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.7e-42 177.2 238 52.1
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.7e-42 177.2 238 52.1
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.2e-42 176.8 237 49.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.5e-41 172.2 247 46.2
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 7.2e-41 171.8 237 47.7
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 9.4e-41 171.4 249 47.4
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 9.4e-41 171.4 236 50.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-40 171.0 247 46.2
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-40 170.6 247 45.7
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.1e-40 170.2 247 45.7
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.7e-40 169.9 232 47.4
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 4.7e-40 169.1 245 47.3
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 8.0e-40 168.3 234 47.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 8.0e-40 168.3 235 47.2
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-39 167.5 247 46.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.0e-39 166.4 253 45.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.1e-38 164.5 244 48.8
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.6e-38 163.3 236 48.3
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 3.3e-38 162.9 233 44.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.3e-38 162.9 247 47.8
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.7e-37 159.5 232 45.7
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 3.7e-37 159.5 253 42.7
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 4.8e-37 159.1 236 47.0
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.2e-37 158.3 256 42.2
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.4e-36 157.5 255 43.9
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.4e-36 157.5 245 42.4
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 3.1e-36 156.4 236 45.3
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.3e-36 155.6 234 44.0
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 7.0e-36 155.2 231 43.3
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 5.9e-35 152.1 240 45.8
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.9e-35 152.1 235 43.8
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 7.7e-35 151.8 235 46.0
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.7e-35 151.8 258 39.9
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.0e-34 151.4 247 44.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.0e-34 151.4 234 45.3
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-34 151.4 234 43.6
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-34 151.0 234 43.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.3e-34 151.0 234 43.6
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.7e-34 150.6 246 45.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.2e-34 150.2 244 40.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.9e-34 149.8 234 42.3
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 3.8e-34 149.4 235 44.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.8e-34 149.4 239 43.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.8e-34 149.4 237 43.5
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 6.5e-34 148.7 246 43.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 6.5e-34 148.7 235 43.8
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.9e-33 147.1 240 43.8
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.9e-33 147.1 237 44.7
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.5e-33 146.7 240 44.6
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.5e-33 145.6 234 41.5
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.4e-33 144.8 231 43.7
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.2e-32 144.4 238 44.1
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.6e-32 144.1 228 46.5
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.6e-32 142.9 235 43.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 8.0e-32 141.7 242 39.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.4e-31 141.0 260 38.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.2e-31 139.0 233 42.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.2e-31 139.0 239 40.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.4e-30 136.0 256 42.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.7e-30 134.8 238 41.2
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 9.7e-30 134.8 243 41.2
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.7e-29 132.9 249 41.0
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 3.7e-29 132.9 241 39.0
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-29 132.9 232 41.8
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.3e-29 131.7 220 44.5
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.1e-28 131.3 250 39.6
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.4e-28 131.0 244 40.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.1e-28 129.8 240 41.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.1e-28 128.3 237 40.1
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 7.7e-27 125.2 244 39.8
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.0e-26 124.8 226 39.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.7e-26 124.0 235 38.3
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 2.2e-26 123.6 237 39.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 5.0e-26 122.5 233 38.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.0e-26 122.5 244 37.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 3.2e-25 119.8 232 36.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 5.5e-25 119.0 234 35.9
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.5e-25 119.0 224 40.2
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.2e-24 117.9 232 37.9
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-24 117.5 253 35.6
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.6e-24 117.5 242 42.6
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.7e-24 116.7 231 35.1
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.6e-24 116.3 229 36.2
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.3e-23 113.6 221 38.0
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.5e-22 110.9 239 38.1
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.3e-21 107.8 263 36.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 6.3e-21 105.5 242 33.1
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.1e-20 104.8 231 35.9
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 5.4e-20 102.4 242 36.4
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.2e-19 101.3 229 33.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.5e-19 99.8 241 35.3
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 4.5e-19 99.4 211 37.9
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 5.9e-19 99.0 234 31.2
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.0e-18 98.2 160 41.2
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.3e-18 97.8 194 40.2
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.9e-18 96.7 229 33.6
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 5.0e-18 95.9 237 38.0
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 8.6e-18 95.1 233 36.9
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 8.6e-18 95.1 233 36.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 8.6e-18 95.1 241 34.9
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.6e-18 95.1 229 35.4
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 8.6e-18 95.1 269 35.3
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.6e-18 95.1 241 35.3
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.1e-17 94.7 257 33.9
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 9.5e-17 91.7 237 33.3
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.8e-16 90.1 230 37.0
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.8e-16 90.1 237 32.9
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.8e-16 90.1 237 32.9
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 6.1e-16 89.0 227 33.5
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.1e-16 89.0 227 32.6
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 8.0e-16 88.6 235 36.2
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 8.0e-16 88.6 235 36.2
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 8.0e-16 88.6 235 36.2
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.0e-15 88.2 227 33.0
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.0e-15 88.2 227 33.0
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 6.8e-15 85.5 241 33.6
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.0e-14 84.0 245 35.1
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.4e-14 83.2 239 35.1
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 5.7e-14 82.4 229 34.1
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.7e-14 82.4 158 39.2
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.2e-13 80.5 252 28.2
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.2e-13 80.5 223 34.1
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.8e-13 80.1 222 31.5
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.7e-13 79.7 218 36.7
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 8.3e-13 78.6 221 31.2
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 8.3e-13 78.6 225 33.8
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.4e-12 77.0 223 34.1
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.2e-12 76.6 267 31.5
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.2e-12 76.6 217 32.7
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.5e-11 72.8 221 29.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.3e-10 70.5 261 29.9
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 8.6e-10 68.6 187 31.0
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.5e-09 67.8 145 39.3
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.9e-09 67.4 235 29.4
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 4.7e-08 62.8 149 40.3
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.0e-08 62.0 107 35.5
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.0e-07 61.6 106 35.8
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-07 61.2 190 31.6
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.4e-07 61.2 106 34.9
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.0e-06 57.4 60 58.3
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.6e-06 57.0 104 36.5


User provided reference genes

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