Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.1e-68 263.1 121 100.0
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.3e-17 91.7 120 42.5
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.2e-16 90.1 122 43.4
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 6.2e-16 87.8 124 45.2
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.4e-15 86.7 120 44.2
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 4.0e-15 85.1 121 45.5
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 5.2e-15 84.7 113 44.2
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.5e-14 83.2 126 43.7
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.5e-14 83.2 124 42.7
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.0e-14 82.8 130 43.1
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 3.4e-14 82.0 126 43.7
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 4.4e-14 81.6 122 43.4
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 5.8e-14 81.3 125 44.0
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.3e-13 80.1 116 40.5
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.3e-13 80.1 116 40.5
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.3e-13 80.1 124 42.7
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.3e-13 80.1 124 41.1
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.9e-13 79.0 116 43.1
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 2.4e-12 75.9 112 41.1
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 5.4e-12 74.7 118 44.1
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 9.2e-12 73.9 88 50.0
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 9.2e-12 73.9 106 43.4
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.2e-11 73.6 111 42.3
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.1e-11 72.8 82 52.4
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 2.7e-11 72.4 112 42.9
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.7e-11 72.4 110 43.6
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 3.5e-11 72.0 114 39.5
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 3.5e-11 72.0 124 40.3
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 6.0e-11 71.2 129 40.3
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 6.0e-11 71.2 112 41.1
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 6.0e-11 71.2 113 41.6
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 6.0e-11 71.2 112 42.9
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 1.0e-10 70.5 115 41.7
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 2.3e-10 69.3 117 37.6
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 2.3e-10 69.3 111 43.2
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.0e-10 68.9 121 41.3
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 3.9e-10 68.6 129 39.5
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 5.1e-10 68.2 116 43.1
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 5.1e-10 68.2 117 38.5
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 6.6e-10 67.8 110 41.8
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 8.6e-10 67.4 114 41.2
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.5e-09 66.6 142 36.6
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.9e-09 66.2 125 39.2
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 2.5e-09 65.9 120 40.0
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.6e-09 64.7 120 37.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 7.3e-09 64.3 112 40.2
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 9.5e-09 63.9 127 38.6
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 9.5e-09 63.9 113 36.3
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 2.1e-08 62.8 123 38.2
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 2.1e-08 62.8 121 33.9
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 2.1e-08 62.8 117 37.6
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 2.1e-08 62.8 130 36.2
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.8e-08 62.4 84 46.4
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.8e-08 62.4 84 46.4
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.8e-08 62.4 84 46.4
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 3.6e-08 62.0 114 42.1
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 3.6e-08 62.0 109 36.7
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 8.1e-08 60.8 121 36.4
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 8.1e-08 60.8 119 38.7
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 8.1e-08 60.8 117 35.0
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.1e-07 60.5 114 39.5
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.8e-07 59.7 126 34.9
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.8e-07 59.7 126 34.9
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.8e-07 59.7 114 37.7
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.8e-07 59.7 120 37.5
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.8e-07 59.7 119 37.0
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.3e-07 59.3 119 37.0
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 4.0e-07 58.5 121 33.9
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 4.0e-07 58.5 114 38.6
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 4.0e-07 58.5 125 32.8
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 5.2e-07 58.2 125 34.4
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 5.2e-07 58.2 125 34.4
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 5.2e-07 58.2 125 34.4
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 5.2e-07 58.2 113 35.4
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 5.2e-07 58.2 118 37.3
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 5.2e-07 58.2 115 34.8
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 6.8e-07 57.8 121 31.4
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 6.8e-07 57.8 121 31.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 6.8e-07 57.8 121 35.5
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 6.8e-07 57.8 115 37.4
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 8.9e-07 57.4 112 36.6
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 8.9e-07 57.4 115 35.7
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 2.0e-06 56.2 115 37.4
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 2.0e-06 56.2 113 35.4
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.0e-06 56.2 80 41.2
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 2.0e-06 56.2 75 44.0
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 2.0e-06 56.2 122 36.9
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 2.6e-06 55.8 111 36.9
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 4.4e-06 55.1 118 35.6
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 5.8e-06 54.7 121 32.2
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 5.8e-06 54.7 121 31.4
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 5.8e-06 54.7 121 31.4
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 7.6e-06 54.3 121 31.4
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 7.6e-06 54.3 121 31.4
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 7.6e-06 54.3 121 31.4
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 7.6e-06 54.3 120 33.3


User provided reference genes

Program Settings