Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 0.0e+00 1081.2 552 100.0
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 1.8e-240 835.9 554 76.9
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.1e-237 826.6 557 77.7
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 6.1e-236 820.8 556 76.3
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 7.9e-236 820.5 556 76.3
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.6e-234 815.5 556 75.4
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 3.3e-234 815.1 556 76.3
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 2.8e-233 812.0 556 74.8
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 6.3e-233 810.8 556 75.0
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 1.4e-232 809.7 556 74.6
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 9.1e-232 807.0 557 74.7
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.5e-231 806.2 556 74.3
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 2.0e-231 805.8 556 75.5
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.7e-230 802.7 556 74.1
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.7e-230 802.7 556 75.0
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 5.0e-230 801.2 556 75.0
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 8.5e-230 800.4 556 74.8
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 1.5e-229 799.7 554 74.4
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.5e-229 798.9 556 74.6
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.2e-229 797.3 557 74.0
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 9.4e-229 797.0 556 74.6
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.2e-228 796.6 575 71.8
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 2.7e-228 795.4 558 74.6
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.5e-226 789.6 556 73.9
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 2.0e-226 789.3 556 73.2
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 5.7e-226 787.7 555 73.0
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.3e-225 786.6 555 73.2
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.7e-225 786.2 555 74.4
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 3.7e-225 785.0 573 73.5
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 6.3e-225 784.3 556 72.7
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 6.3e-225 784.3 556 72.7
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 6.3e-225 784.3 555 73.7
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 7.0e-224 780.8 553 72.0
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 9.1e-224 780.4 557 72.4
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 2.6e-223 778.9 555 72.3
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 4.5e-223 778.1 577 70.9
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 5.9e-223 777.7 556 73.6
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 7.7e-223 777.3 556 73.4
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 7.7e-223 777.3 556 73.6
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.3e-222 776.5 556 72.8
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 8.5e-222 773.9 583 70.3
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 8.5e-222 773.9 555 71.7
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.9e-221 772.7 556 73.4
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 2.5e-221 772.3 539 73.7
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.5e-221 772.3 556 71.9
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 5.5e-221 771.2 556 71.8
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 5.5e-221 771.2 555 72.6
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 4.7e-220 768.1 556 72.5
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 6.1e-220 767.7 556 72.1
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.4e-219 766.5 556 72.8
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 2.3e-219 765.8 560 71.4
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 4.8e-217 758.1 557 71.5
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 1.1e-216 756.9 553 71.1
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 1.1e-216 756.9 579 69.1
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.4e-216 756.5 558 69.9
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.8e-216 756.1 554 70.9
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.6e-215 753.1 557 70.2
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 2.7e-215 752.3 554 69.5
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 3.5e-215 751.9 557 71.3
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.7e-214 749.6 563 71.9
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 2.2e-214 749.2 555 70.6
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 2.2e-214 749.2 556 71.0
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 6.5e-214 747.7 564 70.6
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.5e-213 746.5 555 70.8
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 5.5e-213 744.6 557 70.6
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 5.5e-213 744.6 555 70.5
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 7.2e-213 744.2 553 70.9
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 9.4e-213 743.8 553 70.9
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.6e-212 743.0 574 68.8
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 8.0e-212 740.7 521 74.3
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 4.0e-211 738.4 557 68.8
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 2.6e-210 735.7 570 68.8
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 7.5e-210 734.2 563 68.7
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 7.5e-210 734.2 533 73.4
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.0e-207 726.1 514 74.3
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 4.5e-207 724.9 588 66.8
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.5e-207 724.9 556 68.9
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 3.3e-205 718.8 556 68.2
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 5.6e-205 718.0 557 67.3
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 5.6e-205 718.0 559 68.0
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.2e-204 716.8 558 68.1
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.1e-204 716.1 558 67.6
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 3.6e-204 715.3 493 75.1
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 6.1e-204 714.5 561 68.6
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 6.8e-203 711.1 557 66.4
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 8.9e-203 710.7 557 67.3
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 5.7e-202 708.0 557 68.4
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 1.7e-201 706.4 555 67.9
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 2.9e-201 705.7 561 67.0
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 1.4e-200 703.4 559 66.4
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 5.4e-200 701.4 494 74.7
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.7e-199 699.1 556 67.3
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 2.7e-199 699.1 553 65.3
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 7.8e-199 697.6 553 64.9
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.0e-198 697.2 532 69.4
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 2.5e-197 692.6 553 64.9
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.2e-196 690.3 554 64.4
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 2.1e-196 689.5 553 64.4
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 4.0e-195 685.3 551 65.2
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 2.9e-193 679.1 553 64.2
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 3.2e-192 675.6 553 63.1
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 3.5e-191 672.2 553 62.9
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 4.6e-191 671.8 554 63.2
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 4.6e-191 671.8 554 63.2
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 4.7e-188 661.8 492 69.7
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 7.5e-186 654.4 555 62.7
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.3e-185 653.7 551 63.9
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 6.0e-183 644.8 495 67.5
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 7.8e-183 644.4 537 61.5
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 2.4e-176 622.9 547 62.2
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 1.7e-174 616.7 423 75.2
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 4.0e-171 605.5 555 59.1
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 2.3e-166 589.7 504 64.3
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 3.6e-164 582.4 441 68.5
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.5e-162 577.0 564 55.5
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 1.3e-153 547.4 552 56.0
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 5.1e-150 535.4 565 52.9
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 9.6e-149 531.2 397 72.5
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 2.0e-146 523.5 571 52.2
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 6.5e-145 518.5 456 61.8
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.9e-144 516.9 405 65.2
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 2.7e-143 513.1 540 54.1
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 1.5e-141 507.3 356 73.6
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 1.0e-126 458.0 404 62.1
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.8e-121 439.5 533 48.8
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 1.7e-113 414.1 293 72.7
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 2.7e-111 406.8 583 44.1
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.8e-107 394.0 281 72.2
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 1.2e-103 381.3 566 44.9
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 2.6e-101 373.6 540 43.0
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.9e-72 277.7 217 67.7
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.5e-69 268.1 488 39.1
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 9.2e-59 232.3 368 44.6
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 3.8e-52 210.3 279 44.8
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 5.8e-45 186.4 142 69.0
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 6.0e-42 176.4 142 66.9
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 3.9e-41 173.7 200 54.0
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 7.4e-40 169.5 144 57.6
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 4.8e-39 166.8 270 40.4
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 1.4e-35 155.2 110 70.0
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 1.6e-31 141.7 100 70.0
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.7e-31 140.6 137 56.2
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 2.4e-30 137.9 112 61.6
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 6.7e-25 119.8 77 74.0
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 7.4e-24 116.3 131 51.1
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.7e-20 105.1 82 63.4
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 5.1e-17 93.6 84 58.3
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 6.7e-17 93.2 208 32.7
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 1.1e-16 92.4 85 60.0
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.6e-13 81.3 72 58.3


User provided reference genes

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