Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.4e-181 639.4 309 100.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-139 499.6 300 79.7
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.1e-138 496.9 310 77.7
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.1e-138 496.9 300 79.3
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 5.6e-138 494.6 293 81.6
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 7.3e-138 494.2 293 80.5
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 9.5e-138 493.8 300 78.7
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 6.2e-137 491.1 294 78.6
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 8.1e-137 490.7 301 77.7
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.1e-136 490.3 294 78.9
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 3.1e-136 488.8 297 78.8
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 6.8e-136 487.6 293 79.5
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.0e-135 486.1 294 78.6
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 9.9e-135 483.8 311 75.9
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.2e-134 482.6 295 78.6
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.9e-134 482.3 289 79.9
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 8.3e-134 480.7 297 77.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.9e-133 479.6 298 77.5
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 3.2e-133 478.8 302 76.5
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 4.1e-133 478.4 297 77.1
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 4.1e-133 478.4 301 76.4
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 5.4e-133 478.0 289 81.3
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 7.1e-133 477.6 295 77.3
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 9.2e-133 477.2 303 76.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.2e-132 476.9 296 76.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 2.1e-132 476.1 295 76.3
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 2.1e-132 476.1 294 76.2
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.1e-132 476.1 288 78.1
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 2.7e-132 475.7 295 76.3
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 2.7e-132 475.7 296 76.0
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.7e-132 475.7 297 77.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 6.0e-132 474.6 295 76.3
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 7.8e-132 474.2 294 77.6
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 7.8e-132 474.2 297 76.4
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.0e-131 473.8 301 75.4
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.7e-131 473.0 298 78.5
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 2.3e-131 472.6 295 76.9
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 5.1e-131 471.5 298 76.2
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.1e-130 470.3 301 74.8
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.1e-130 470.3 295 76.6
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.1e-130 470.3 295 76.6
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.5e-130 469.9 301 76.1
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.9e-130 469.5 306 72.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.9e-130 469.5 287 76.7
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.5e-130 469.2 297 75.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 4.3e-130 468.4 296 76.7
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 4.3e-130 468.4 295 76.9
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 4.3e-130 468.4 296 76.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 7.3e-130 467.6 299 74.2
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 9.6e-130 467.2 295 76.3
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 2.8e-129 465.7 294 76.2
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 4.7e-129 464.9 295 76.3
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.1e-128 463.8 327 70.3
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.0e-128 461.8 300 75.0
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 4.0e-128 461.8 296 74.0
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 6.8e-128 461.1 297 76.1
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 6.8e-128 461.1 295 75.6
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 6.8e-128 461.1 280 78.9
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 8.9e-128 460.7 293 74.1
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 8.9e-128 460.7 288 77.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.9e-128 460.7 289 78.5
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 8.9e-128 460.7 295 72.9
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.2e-127 460.3 260 83.8
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 7.6e-127 457.6 295 72.2
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 2.2e-126 456.1 297 73.1
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 3.8e-126 455.3 298 72.8
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.1e-125 453.8 295 73.9
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.1e-125 453.8 307 72.0
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.4e-125 453.4 293 71.7
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.9e-125 453.0 291 77.0
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.2e-125 452.2 297 74.7
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 4.2e-125 451.8 295 71.5
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.6e-124 449.9 278 75.2
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.7e-123 446.4 299 72.6
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 2.3e-123 446.0 295 72.2
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 5.6e-122 441.4 270 76.3
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 5.6e-122 441.4 295 71.2
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 7.3e-122 441.0 296 71.3
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 7.3e-122 441.0 301 69.8
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.8e-121 439.1 283 75.6
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 4.8e-121 438.3 280 74.3
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 6.9e-120 434.5 305 68.5
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 9.0e-120 434.1 404 56.7
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.2e-119 433.7 295 70.5
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.2e-118 429.5 263 76.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 4.2e-117 425.2 298 71.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 6.0e-116 421.4 306 70.6
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 7.9e-116 421.0 284 72.2
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.6e-113 413.3 297 68.4
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.2e-111 407.1 297 69.7
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.2e-111 407.1 297 69.7
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 4.5e-111 405.2 274 70.4
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.4e-109 399.4 261 73.9
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.2e-108 397.1 246 78.5
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.7e-108 396.0 300 65.0
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 3.5e-108 395.6 321 63.9
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.0e-107 394.0 296 67.9
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.8e-104 383.3 246 74.8
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 8.4e-102 374.4 257 66.5
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 3.2e-101 372.5 276 67.4
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.8e-99 366.7 212 83.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.5e-98 363.6 211 82.5
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 2.9e-94 349.4 285 63.5
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 4.2e-93 345.5 202 79.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.5e-92 342.4 202 77.7
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 3.0e-91 339.3 243 71.6
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 2.9e-86 322.8 251 64.1
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.2e-73 280.0 302 51.3
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.9e-70 269.6 257 51.4
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 5.0e-70 268.9 298 46.3
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.1e-69 267.7 215 65.1
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.4e-64 250.8 265 52.5
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 7.0e-56 221.9 262 45.4
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.7e-52 209.9 288 46.2
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 6.8e-51 205.3 176 60.2
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 7.5e-50 201.8 130 76.9
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.3e-46 190.3 145 69.0
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.4e-40 171.0 97 82.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 6.6e-38 162.2 163 54.6
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 7.0e-32 142.1 81 77.8
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 4.6e-31 139.4 113 62.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 9.5e-29 131.7 66 83.3
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 8.1e-28 128.6 105 59.0
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.8e-15 85.5 67 64.2
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.5e-13 81.3 56 69.6
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.3e-09 68.2 47 70.2
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.2e-07 61.6 40 77.5
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 7.8e-07 58.9 33 72.7


User provided reference genes

Program Settings