Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.3e-122 441.8 237 100.0
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.6e-79 299.3 226 74.3
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 2.7e-76 289.3 230 68.3
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 3.9e-75 285.4 230 67.8
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 3.7e-73 278.9 234 66.2
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 6.5e-70 268.1 235 67.2
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 1.9e-69 266.5 236 64.4
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 1.2e-68 263.8 231 68.0
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 1.6e-68 263.5 233 66.5
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.4e-67 260.4 229 63.8
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 3.0e-67 259.2 230 67.8
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 5.2e-67 258.5 230 67.0
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 8.8e-67 257.7 234 63.7
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 8.8e-67 257.7 231 64.9
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 1.3e-65 253.8 231 64.5
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 2.2e-65 253.1 246 61.4
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.8e-65 252.7 231 64.1
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.4e-64 250.4 229 66.8
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.4e-64 250.4 244 59.8
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.3e-64 248.4 231 61.9
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 9.1e-64 247.7 240 61.7
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.6e-63 246.9 234 62.0
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 1.7e-62 243.4 224 62.9
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 3.8e-62 242.3 232 60.3
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 5.0e-62 241.9 222 65.3
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 5.0e-62 241.9 226 62.4
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 4.2e-61 238.8 217 63.1
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.2e-60 237.3 217 63.6
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.2e-60 237.3 217 65.9
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 2.3e-59 233.0 224 62.9
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 4.0e-59 232.3 214 61.7
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 6.8e-59 231.5 221 62.4
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 7.5e-58 228.0 231 58.4
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 1.7e-57 226.9 225 60.0
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 2.8e-57 226.1 214 61.2
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 3.7e-57 225.7 224 60.3
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 4.8e-57 225.3 225 60.0
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 6.3e-57 224.9 224 60.3
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 1.8e-56 223.4 225 59.6
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 2.4e-56 223.0 242 55.8
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 4.1e-56 222.2 228 59.6
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 8.6e-54 214.5 246 54.1
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 1.5e-53 213.8 228 57.9
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 1.6e-52 210.3 234 54.3
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.6e-52 210.3 239 54.4
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.6e-52 210.3 241 55.2
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 2.1e-52 209.9 239 56.1
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.8e-51 206.8 224 56.2
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 4.0e-51 205.7 242 56.2
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.0e-51 205.7 244 53.7
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 4.0e-51 205.7 236 55.1
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 5.2e-51 205.3 247 51.4
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 6.8e-51 204.9 248 52.0
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 1.2e-50 204.1 250 53.2
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.2e-50 204.1 221 54.3
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 1.5e-50 203.8 219 59.8
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.4e-50 202.2 235 52.8
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 7.5e-50 201.4 249 51.4
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 7.5e-50 201.4 219 59.8
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 9.8e-50 201.1 250 53.2
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 9.8e-50 201.1 250 53.2
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 9.8e-50 201.1 232 56.0
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 6.3e-49 198.4 245 50.6
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 6.3e-49 198.4 245 50.6
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.1e-48 197.6 226 56.6
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.8e-48 196.8 249 50.2
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 1.8e-48 196.8 249 50.2
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 1.8e-48 196.8 249 50.2
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 2.4e-48 196.4 228 53.9
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 2.7e-47 193.0 238 53.4
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 2.3e-46 189.9 236 53.0
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 2.9e-46 189.5 239 56.1
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 3.9e-46 189.1 252 50.4
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 6.6e-46 188.3 174 59.2
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 7.3e-45 184.9 175 61.7
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 9.5e-45 184.5 227 56.4
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 2.1e-44 183.3 246 50.4
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 2.1e-44 183.3 160 68.1
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.6e-44 182.6 232 55.6
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 6.1e-44 181.8 226 52.2
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 6.1e-44 181.8 228 53.5
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.0e-43 181.0 225 55.6
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.4e-43 180.6 210 53.8
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.8e-43 180.3 224 52.2
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 4.0e-43 179.1 166 58.4
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 8.9e-43 177.9 220 53.6
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 2.0e-42 176.8 248 50.4
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 3.4e-42 176.0 207 57.0
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 4.9e-41 172.2 237 48.1
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 4.9e-41 172.2 225 54.2
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 4.1e-40 169.1 232 48.3
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 5.4e-40 168.7 180 54.4
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-39 167.2 225 55.6
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 4.6e-39 165.6 163 57.1
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 3.9e-38 162.5 254 45.7
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 1.6e-36 157.1 225 49.8
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 3.6e-36 156.0 186 52.7
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.1e-35 152.9 220 45.5
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 1.3e-33 147.5 239 46.0
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 2.9e-33 146.4 226 47.8
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.4e-32 144.1 212 44.3
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 3.5e-31 139.4 226 43.4
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 3.2e-24 116.3 173 52.0
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 4.1e-24 115.9 223 38.1
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-23 114.0 105 65.7
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 6.0e-23 112.1 253 37.5
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 7.3e-21 105.1 110 58.2
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 6.4e-17 92.0 68 69.1
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 8.4e-17 91.7 54 85.2
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 5.4e-16 89.0 163 46.0
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 7.1e-16 88.6 51 86.3
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.7e-14 84.0 92 56.5
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 8.7e-14 81.6 140 41.4
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 8.7e-14 81.6 140 41.4
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 1.8e-11 73.9 89 48.3
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 5.3e-11 72.4 99 43.4
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 2.9e-09 66.6 105 48.6
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 1.2e-07 61.2 93 39.8
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.6e-07 60.8 80 51.2
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 6.0e-07 58.9 70 52.9
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 6.0e-07 58.9 175 34.3
C09p56080 Brassica napus HOM05D006466 ORTHO05D008084 2.3e-06 57.0 93 37.6
C03p59450 Brassica napus HOM05D006466 ORTHO05D008084 6.6e-06 55.5 69 43.5


User provided reference genes

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