Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 2979.9 1476 100.0
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1840.5 1506 63.7
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1765.7 1515 61.6
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1723.8 1516 60.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1710.7 1547 58.5
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1709.1 1513 59.7
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1702.6 1506 59.9
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1699.9 1515 59.6
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1689.5 1517 58.5
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1686.0 1511 59.2
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1683.7 1522 59.7
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1680.6 1514 58.7
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1679.8 1514 59.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1667.9 1514 58.2
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1665.6 1522 58.5
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1661.0 1514 58.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1649.0 1550 57.8
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1640.2 1507 57.7
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1637.5 1539 57.5
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1635.2 1466 59.5
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1632.5 1522 58.0
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1630.2 1478 59.6
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1622.1 1476 58.3
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1619.0 1524 57.0
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1596.3 1545 56.2
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1592.8 1611 53.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1560.0 1519 55.4
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1545.8 1603 53.1
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1543.1 1501 54.8
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1541.6 1524 54.7
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1536.2 1503 54.6
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1526.9 1505 54.6
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1521.5 1499 54.9
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1521.5 1508 54.6
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1518.4 1509 54.3
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1518.1 1501 54.6
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1514.2 1513 55.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1512.3 1515 54.1
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1511.1 1520 53.2
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1510.7 1505 54.0
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1508.0 1516 53.0
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1508.0 1507 54.6
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1499.2 1533 53.2
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1497.3 1530 53.1
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1496.1 1518 53.3
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1491.9 1504 54.5
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1490.7 1500 53.4
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1489.6 1519 53.4
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1488.8 1502 53.9
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1488.0 1505 53.2
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1480.3 1507 53.7
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1479.9 1411 56.4
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1469.1 1494 53.3
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1467.6 1512 52.6
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1466.8 1496 53.6
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1466.1 1550 52.4
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1464.5 1524 52.6
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1463.4 1540 51.7
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1459.9 1559 51.8
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1458.7 1348 58.1
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1457.6 1513 52.7
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1455.3 1496 53.1
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1455.3 1496 53.1
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1453.3 1523 52.4
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1449.9 1569 51.3
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1448.7 1487 54.2
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1444.1 1529 51.8
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1443.7 1515 52.4
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1440.6 1508 51.5
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1436.8 1505 52.5
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1430.6 1518 51.3
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1427.5 1564 50.9
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1426.8 1500 51.7
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1425.2 1538 50.2
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1421.8 1538 50.8
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1416.4 1516 51.9
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1414.8 1504 51.1
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1400.2 1512 51.1
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1392.5 1497 49.8
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1387.9 1485 51.6
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1386.7 1533 50.4
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1377.8 1540 51.3
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1373.2 1516 50.5
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1352.8 1507 49.6
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1345.5 1409 52.9
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1284.2 1347 52.4
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1273.1 1586 47.2
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1247.6 1542 46.0
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1247.3 1354 52.2
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1246.9 1438 48.7
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1238.4 1299 53.0
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1213.0 1540 46.3
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1135.2 1131 54.8
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1124.8 1526 43.0
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.7e-309 1066.6 1109 53.4
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.2e-275 954.1 1001 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 7.8e-254 881.7 1620 36.4
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 5.6e-212 742.7 894 46.1
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 9.0e-186 655.6 483 71.2
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.2e-184 651.0 1488 32.1
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.0e-177 627.9 483 68.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 2.1e-150 538.1 684 44.0
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.8e-149 533.1 1034 34.6
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.9e-111 408.7 407 54.3
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.9e-66 259.2 595 30.8
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.7e-54 219.5 187 57.8
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 7.5e-47 194.1 166 63.3
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 8.6e-35 154.1 107 66.4
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 4.5e-28 131.7 91 67.0
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.4e-24 120.2 86 68.6
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.8e-24 117.9 104 59.6
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 5.7e-23 114.8 89 59.6
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.7e-22 113.2 69 79.7
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.9e-19 102.1 87 59.8
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.9e-19 102.1 87 59.8
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.3e-18 97.8 67 76.1
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 1.2e-07 63.9 71 54.9
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 6.4e-06 58.2 154 29.2


User provided reference genes

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