Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 8.8e-85 317.0 171 100.0
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.4e-42 176.0 170 60.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 6.0e-41 171.4 175 54.9
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 8.7e-40 167.5 166 57.2
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.1e-39 167.2 173 57.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.9e-39 166.4 166 56.6
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.3e-39 165.2 153 60.8
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.3e-39 165.2 153 60.8
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 9.6e-39 164.1 153 59.5
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 4.8e-38 161.8 171 57.9
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 6.2e-38 161.4 164 57.3
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.8e-37 159.8 170 57.1
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.3e-37 158.3 170 56.5
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.9e-37 157.9 184 53.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.9e-37 157.9 170 56.5
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.2e-36 157.1 175 56.0
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.4e-36 155.6 170 55.9
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.7e-35 153.3 149 55.0
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 4.9e-35 151.8 162 61.1
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.4e-34 149.4 181 55.2
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 7.1e-34 147.9 170 57.1
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.5e-33 145.6 166 53.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.5e-33 145.6 173 52.0
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.5e-33 145.6 170 54.7
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 4.6e-33 145.2 183 51.4
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.0e-32 144.1 173 52.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.3e-32 143.7 160 60.0
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.7e-32 143.3 173 50.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 2.3e-32 142.9 171 49.1
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.9e-32 142.1 150 59.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.1e-32 141.7 188 53.2
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 6.6e-32 141.4 177 54.8
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-31 140.6 179 55.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.1e-31 140.6 179 50.3
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.1e-31 140.6 175 55.4
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.9e-31 139.8 156 53.2
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.9e-31 139.8 156 53.2
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 2.5e-31 139.4 180 51.1
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 2.5e-31 139.4 180 51.1
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 4.3e-31 138.7 181 51.4
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 7.3e-31 137.9 162 51.9
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 7.3e-31 137.9 162 51.9
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 9.6e-31 137.5 179 49.7
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 2.1e-30 136.3 166 51.2
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.1e-30 136.3 169 47.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.1e-30 136.3 155 58.1
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 3.6e-30 135.6 164 54.3
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 3.6e-30 135.6 182 48.4
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 6.2e-30 134.8 182 51.1
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 8.1e-30 134.4 176 49.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-29 133.7 178 50.0
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-29 133.7 178 50.0
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.4e-29 133.7 158 51.9
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-29 133.3 156 51.9
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 4.0e-29 132.1 154 52.6
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 4.0e-29 132.1 156 50.6
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.3e-29 131.7 156 51.3
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.3e-29 131.7 156 51.3
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 9.0e-29 131.0 173 43.4
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.2e-28 130.6 175 47.4
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.2e-28 130.6 148 54.1
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.6e-28 129.4 162 50.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 2.6e-28 129.4 190 49.5
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.5e-28 128.6 176 50.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.8e-28 128.3 156 51.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.8e-28 128.3 180 47.8
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 3.8e-27 125.6 172 45.3
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 4.9e-27 125.2 170 48.8
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 8.4e-27 124.4 168 46.4
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.1e-26 124.0 177 45.8
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.4e-26 123.6 179 48.0
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.4e-26 123.6 177 44.1
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.2e-26 122.1 174 50.0
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.2e-26 122.1 169 46.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 7.1e-26 121.3 185 45.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.6e-25 120.2 185 45.4
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.6e-25 120.2 196 46.9
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.6e-25 120.2 181 44.8
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.1e-25 119.8 186 44.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.1e-25 119.8 153 49.0
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 6.0e-25 118.2 168 44.6
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 6.0e-25 118.2 153 51.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.0e-24 117.5 134 54.5
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 2.3e-24 116.3 180 47.8
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.0e-24 115.9 157 51.6
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 3.0e-24 115.9 154 48.1
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 3.9e-24 115.5 160 46.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.9e-24 115.5 198 43.4
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 5.1e-24 115.2 191 43.5
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 6.7e-24 114.8 201 44.3
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 8.7e-24 114.4 163 47.2
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 8.7e-24 114.4 157 51.0
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.9e-23 113.2 153 51.6
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.3e-23 112.5 162 43.8
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.3e-23 112.1 172 42.4
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 4.3e-23 112.1 170 41.8
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.4e-23 111.3 177 41.8
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.6e-22 110.2 183 48.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 2.1e-22 109.8 161 47.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.1e-22 109.8 171 43.9
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.8e-22 109.4 174 40.2
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.7e-22 109.0 159 50.9
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 6.2e-22 108.2 172 48.8
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 6.2e-22 108.2 179 45.3
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 8.1e-22 107.8 159 50.3
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 8.1e-22 107.8 165 48.5
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 8.1e-22 107.8 165 48.5
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 8.1e-22 107.8 156 50.0
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-21 107.1 151 50.3
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.1e-21 105.9 171 46.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.3e-21 105.1 175 46.9
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 9.0e-21 104.4 170 44.7
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 3.4e-20 102.4 167 43.1
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 4.5e-20 102.1 159 43.4
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.7e-19 100.1 166 41.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.1e-18 97.4 171 45.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 4.2e-18 95.5 93 65.6
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.6e-17 93.6 169 42.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.0e-16 90.9 134 50.0
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.3e-16 90.5 141 43.3
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.9e-16 89.0 96 50.0
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.9e-16 89.0 96 50.0
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.9e-16 89.0 96 50.0
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.3e-15 85.9 175 40.0
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 7.4e-15 84.7 117 46.2
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.4e-13 80.5 116 46.6
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 9.0e-13 77.8 75 57.3
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.7e-11 73.6 63 61.9
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 2.9e-11 72.8 170 34.7
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.9e-11 72.8 54 68.5
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.4e-11 71.2 100 45.0
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-10 70.1 128 41.4
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 5.5e-10 68.6 142 35.9
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.3e-10 67.8 98 46.9
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 9.3e-10 67.8 98 46.9
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.6e-09 67.0 142 35.2
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 2.1e-09 66.6 121 42.1
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 2.1e-09 66.6 151 36.4
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 2.7e-09 66.2 121 42.1
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 2.3e-08 63.2 125 40.8
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.3e-08 63.2 84 48.8
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 3.0e-08 62.8 140 35.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.1e-08 62.0 131 38.9
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.1e-08 62.0 100 44.0
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.1e-08 62.0 100 44.0
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 8.7e-08 61.2 47 63.8
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 1.9e-07 60.1 160 38.8
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 8.2e-06 54.7 98 40.8


User provided reference genes

Program Settings