Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.7e-200 701.8 363 100.0
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 5.4e-124 448.4 299 74.6
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.3e-122 443.7 288 76.4
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 6.6e-122 441.4 339 69.6
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.5e-121 440.3 364 64.3
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.5e-121 439.5 359 65.7
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 9.5e-121 437.6 281 76.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.6e-120 436.8 366 65.3
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 2.1e-120 436.4 304 70.1
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 4.7e-120 435.3 347 66.3
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 8.1e-120 434.5 295 73.6
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.1e-119 434.1 368 62.8
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.8e-119 433.3 372 64.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.0e-118 429.9 293 74.4
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.4e-118 429.1 374 64.2
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 7.5e-118 427.9 360 65.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.9e-117 426.0 347 65.7
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.9e-117 425.2 364 63.5
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 6.4e-117 424.9 363 65.0
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 6.4e-117 424.9 359 66.9
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 8.3e-117 424.5 353 64.0
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 8.3e-117 424.5 365 62.7
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.1e-116 424.1 297 71.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.4e-116 422.9 361 65.4
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.4e-116 422.9 345 65.8
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.4e-116 421.8 360 64.2
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.4e-116 421.8 367 64.3
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 7.1e-116 421.4 364 63.5
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.7e-115 419.5 314 69.1
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 2.7e-115 419.5 369 63.4
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.7e-115 419.5 287 70.7
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 3.5e-115 419.1 286 72.4
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 3.5e-115 419.1 282 75.2
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.0e-114 417.5 364 62.1
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 3.9e-114 415.6 290 68.6
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 5.1e-114 415.2 365 63.0
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 5.1e-114 415.2 366 62.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 8.6e-114 414.5 389 60.2
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 8.6e-114 414.5 353 64.6
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.1e-113 414.1 369 62.6
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 5.6e-113 411.8 343 64.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.3e-113 411.4 366 62.8
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 9.5e-113 411.0 363 62.3
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 9.5e-113 411.0 363 62.3
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 9.5e-113 411.0 289 71.6
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-112 410.6 328 64.0
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-112 410.6 328 64.0
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.6e-112 410.2 365 61.6
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 4.7e-112 408.7 366 61.7
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.2e-112 408.3 369 62.3
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 8.1e-112 407.9 362 61.3
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 8.1e-112 407.9 366 61.5
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 8.1e-112 407.9 366 61.5
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 8.1e-112 407.9 366 61.5
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.0e-111 405.6 321 67.0
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 5.2e-111 405.2 368 63.0
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 6.8e-111 404.8 282 71.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.0e-110 403.3 350 62.3
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.0e-110 403.3 368 61.7
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.0e-110 403.3 365 61.6
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 7.6e-110 401.4 374 59.1
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.6e-110 401.4 329 65.3
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 7.6e-110 401.4 369 62.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 9.9e-110 401.0 362 59.7
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.4e-108 397.1 263 73.8
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 5.4e-108 395.2 365 61.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.6e-107 393.7 311 64.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 2.7e-107 392.9 365 58.6
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.5e-107 392.5 311 64.3
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.6e-107 392.1 365 59.2
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 4.6e-107 392.1 303 66.7
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.3e-106 390.6 343 59.2
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.7e-106 390.2 306 64.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.1e-104 383.3 272 71.3
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.8e-103 380.2 369 58.5
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 6.9e-103 378.3 378 56.9
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.5e-102 377.1 340 57.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 4.9e-101 372.1 260 69.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.1e-100 370.9 367 58.9
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.4e-100 370.5 266 68.4
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 7.8e-99 364.8 250 66.0
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.0e-98 364.4 260 66.9
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 2.8e-96 356.3 361 53.2
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.8e-96 355.5 261 66.3
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.2e-96 355.1 250 66.0
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.5e-94 349.0 370 53.5
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.9e-94 347.8 247 68.8
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.7e-93 347.1 249 69.1
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.7e-93 347.1 367 52.6
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 6.4e-93 345.1 263 65.0
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-92 344.4 254 65.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-92 344.4 248 67.7
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 3.2e-92 342.8 242 68.6
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.4e-92 342.0 254 63.8
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 3.0e-90 336.3 301 56.1
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.3e-89 332.8 265 60.8
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 2.8e-88 329.7 377 55.2
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 4.8e-88 328.9 299 55.9
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.9e-87 325.1 270 58.5
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 9.0e-87 324.7 266 59.8
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.5e-86 323.9 270 59.3
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 7.6e-86 321.6 266 59.4
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 4.9e-85 318.9 266 59.0
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 3.5e-83 312.8 263 56.7
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.5e-83 312.8 263 56.7
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.9e-83 311.6 225 65.3
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.0e-82 311.2 268 56.3
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.3e-82 310.1 242 62.4
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 9.6e-81 304.7 261 57.1
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.3e-80 304.3 257 56.4
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.3e-80 304.3 261 57.1
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.1e-80 303.5 252 59.5
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 8.2e-80 301.6 272 55.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-79 299.3 272 55.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 4.0e-79 299.3 293 52.6
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 9.0e-79 298.1 270 55.2
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.5e-78 297.4 258 55.0
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.8e-78 295.4 272 54.0
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.2e-77 293.5 266 56.8
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 6.5e-77 292.0 257 63.0
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 8.4e-77 291.6 263 52.9
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 8.4e-77 291.6 263 52.9
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-76 289.7 265 51.7
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 4.2e-76 289.3 257 52.9
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 7.1e-76 288.5 232 59.1
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 6.7e-74 282.0 190 72.1
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.1e-73 281.2 248 58.5
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.8e-72 275.8 230 56.5
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.3e-69 267.7 243 54.3
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-68 264.2 256 52.0
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.5e-68 263.5 178 73.0
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.8e-66 257.3 190 65.3
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.3e-64 248.8 260 50.0
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.9e-63 245.4 229 51.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 3.4e-62 243.0 255 49.0
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.4e-62 243.0 255 49.0
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 4.5e-62 242.7 177 66.1
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.2e-59 234.6 287 48.4
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 9.7e-57 224.9 402 37.6
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.5e-54 216.5 293 46.4
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.6e-51 206.5 201 51.7
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 8.0e-51 205.3 180 55.0
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 8.8e-50 201.8 269 43.9
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.2e-48 197.2 140 70.7
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.8e-48 196.8 131 72.5
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.2e-44 183.3 160 56.9
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.6e-43 181.0 166 51.2
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 7.5e-41 172.2 233 41.2
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 6.3e-40 169.1 305 40.0
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.6e-35 154.5 195 46.7
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 7.5e-33 145.6 133 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 7.7e-30 135.6 291 38.8
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.2e-27 128.3 240 35.8
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.3e-24 115.9 110 50.0
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.1e-23 113.2 93 59.1
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.6e-22 111.3 94 58.5
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.0e-22 110.9 153 50.3
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 2.7e-22 110.5 201 39.3
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.9e-21 107.1 88 62.5
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.3e-18 97.4 208 30.8
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 4.0e-18 96.7 65 70.8
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 5.2e-18 96.3 181 36.5
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 5.8e-17 92.8 69 63.8
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.5e-14 83.6 71 57.7
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 7.8e-14 82.4 70 60.0
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.5e-12 78.2 115 47.8
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 3.6e-11 73.6 57 63.2
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 2.3e-10 70.9 58 63.8
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 5.2e-10 69.7 275 28.4
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 6.8e-10 69.3 64 54.7
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 6.8e-10 69.3 61 55.7
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 8.3e-08 62.4 69 46.4


User provided reference genes

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