Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-54 216.1 111 100.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.8e-44 181.4 100 91.0
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.8e-44 181.4 102 90.2
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 7.1e-43 177.2 103 84.5
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 9.3e-43 176.8 102 87.3
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.2e-42 176.4 102 85.3
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.2e-42 176.4 102 85.3
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.2e-42 176.4 102 87.3
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.2e-42 176.4 104 82.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.6e-42 176.0 102 86.3
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.6e-42 176.0 102 84.3
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.6e-42 176.0 102 84.3
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.1e-42 175.6 102 83.3
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.1e-42 175.6 102 84.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.7e-42 175.3 102 86.3
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.5e-42 174.9 102 85.3
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.5e-42 174.9 102 83.3
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 3.5e-42 174.9 102 84.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 4.6e-42 174.5 102 84.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 6.0e-42 174.1 102 82.4
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 6.0e-42 174.1 102 84.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 7.8e-42 173.7 101 87.1
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 7.8e-42 173.7 101 86.1
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.0e-41 173.3 102 83.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.3e-41 172.9 102 84.3
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.3e-41 172.9 102 84.3
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.3e-41 172.9 100 85.0
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.3e-41 172.9 102 84.3
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.3e-41 172.9 102 83.3
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.7e-41 172.6 102 83.3
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.7e-41 172.6 102 82.4
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.7e-41 172.6 100 85.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.3e-41 172.2 102 84.3
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-41 172.2 103 85.4
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.3e-41 172.2 102 83.3
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.0e-41 171.8 102 84.3
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.0e-41 171.8 102 83.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.0e-41 171.8 102 83.3
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.0e-41 171.8 102 83.3
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.9e-41 171.4 102 83.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 3.9e-41 171.4 102 83.3
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 3.9e-41 171.4 102 83.3
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 3.9e-41 171.4 102 84.3
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 5.1e-41 171.0 102 82.4
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 5.1e-41 171.0 102 83.3
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 5.1e-41 171.0 102 83.3
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 5.1e-41 171.0 102 83.3
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 6.6e-41 170.6 102 82.4
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.6e-41 170.6 102 82.4
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 6.6e-41 170.6 102 82.4
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 82.4
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 82.4
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 82.4
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 82.4
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 82.4
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 81.4
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 81.4
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 8.7e-41 170.2 102 83.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.1e-40 169.9 102 80.4
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.1e-40 169.9 102 83.3
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.1e-40 169.9 102 83.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.5e-40 169.5 102 82.4
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.5e-40 169.5 102 81.4
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.5e-40 169.5 102 82.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.9e-40 169.1 102 82.4
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.9e-40 169.1 102 83.3
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.9e-40 169.1 102 82.4
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.5e-40 168.7 102 82.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.5e-40 168.7 102 83.3
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.5e-40 168.7 102 81.4
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.3e-40 168.3 102 82.4
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.3e-40 168.3 102 81.4
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.3e-40 167.9 102 80.4
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 5.6e-40 167.5 102 82.4
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 7.3e-40 167.2 102 81.4
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-40 167.2 102 81.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.6e-40 166.8 100 88.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 9.6e-40 166.8 102 80.4
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 9.6e-40 166.8 102 80.4
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.3e-39 166.4 102 79.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.3e-39 166.4 102 80.4
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.3e-39 166.4 102 81.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.6e-39 166.0 102 81.4
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-39 166.0 102 80.4
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.6e-39 166.0 102 80.4
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.1e-39 165.6 102 78.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 2.1e-39 165.6 102 78.4
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.1e-39 165.6 102 80.4
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.8e-39 165.2 102 79.4
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.8e-39 165.2 102 79.4
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 2.8e-39 165.2 100 84.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.8e-39 165.2 102 79.4
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.8e-39 165.2 102 80.4
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.6e-39 164.9 102 79.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.6e-39 164.9 102 80.4
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.8e-39 164.5 102 81.4
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 6.2e-39 164.1 102 81.4
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 6.2e-39 164.1 102 79.4
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 6.2e-39 164.1 104 81.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 8.1e-39 163.7 102 80.4
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.1e-38 163.3 104 81.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.4e-38 162.9 104 81.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.4e-38 162.9 102 79.4
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.4e-38 162.9 102 79.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.4e-38 162.9 104 80.8
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-38 162.5 102 79.4
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.4e-38 162.2 102 78.4
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 2.4e-38 162.2 102 79.4
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.1e-38 161.8 102 78.4
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 4.0e-38 161.4 102 78.4
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 9.0e-38 160.2 102 77.5
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.2e-37 159.8 102 76.5
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.6e-37 158.7 102 75.5
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 7.6e-37 157.1 102 76.5
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 7.6e-37 157.1 102 77.5
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.2e-36 155.6 102 73.5
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.9e-36 155.2 135 63.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.9e-35 152.5 102 76.5
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 4.2e-35 151.4 144 59.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.7e-33 143.7 91 80.2
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.1e-32 143.3 162 51.9
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.5e-32 142.9 146 55.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.5e-32 142.1 102 66.7
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 3.3e-32 141.7 102 71.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-31 139.8 76 92.1
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-31 138.7 85 82.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.4e-30 135.6 102 65.7
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 3.1e-30 135.2 103 64.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 4.0e-30 134.8 85 77.6
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.2e-29 133.3 102 69.6
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 4.5e-29 131.3 82 80.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.9e-28 128.6 102 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 6.4e-28 127.5 102 60.8
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.3e-25 119.8 75 78.7
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.5e-24 116.3 100 64.0
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.3e-23 113.2 76 76.3
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.1e-23 112.5 79 73.4
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.7e-23 111.7 67 80.6
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.4e-22 109.8 67 74.6
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.4e-22 109.0 70 78.6
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.5e-21 106.3 95 62.1
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-19 98.2 77 70.1
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 2.7e-18 95.5 103 44.7
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 7.9e-18 94.0 71 62.0
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 7.9e-18 94.0 99 43.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.3e-17 92.4 125 47.2
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 3.9e-17 91.7 101 41.6
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.1e-16 90.1 60 78.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 5.7e-16 87.8 104 43.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 9.4e-11 70.5 44 77.3
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.7e-10 68.9 111 41.4
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.1e-10 67.8 114 40.4
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.1e-10 67.8 114 40.4
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.4e-09 66.6 114 40.4
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.3e-09 65.9 114 39.5
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.1e-09 64.7 36 88.9
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.3e-08 61.6 36 83.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-06 55.8 37 73.0
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 5.3e-06 54.7 75 48.0


User provided reference genes

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