Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.9e-46 186.4 94 100.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-33 146.4 102 78.4
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-33 146.4 102 78.4
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.0e-31 137.9 103 73.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 9.0e-31 136.7 102 71.6
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.2e-30 136.3 102 72.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.5e-30 136.0 94 75.5
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.6e-30 135.2 98 71.4
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 3.4e-30 134.8 102 70.6
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 5.8e-30 134.0 94 76.6
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 5.8e-30 134.0 96 72.9
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 9.9e-30 133.3 98 71.4
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.7e-29 132.5 99 70.7
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.7e-29 132.5 93 75.3
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.2e-29 132.1 97 70.1
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.9e-29 131.7 103 70.9
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.9e-29 131.7 98 70.4
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.8e-29 131.3 97 69.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 4.9e-29 131.0 99 69.7
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 4.9e-29 131.0 97 71.1
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 4.9e-29 131.0 97 71.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 6.4e-29 130.6 96 70.8
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 6.4e-29 130.6 99 69.7
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 8.4e-29 130.2 96 70.8
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.1e-28 129.8 93 72.0
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.1e-28 129.8 95 70.5
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.4e-28 129.4 96 72.9
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.4e-28 129.4 96 70.8
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.4e-28 129.4 96 69.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.4e-28 129.4 97 68.0
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.9e-28 129.0 95 71.6
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.9e-28 129.0 96 71.9
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.5e-28 128.6 94 70.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.5e-28 128.6 93 72.0
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.5e-28 128.6 102 68.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.5e-28 128.6 102 67.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.5e-28 128.6 97 69.1
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.5e-28 128.6 102 66.7
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.5e-28 128.6 92 71.7
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.2e-28 128.3 101 67.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.2e-28 128.3 99 67.7
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.2e-28 128.3 97 69.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 3.2e-28 128.3 97 70.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.2e-28 127.9 97 69.1
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.2e-28 127.9 102 67.6
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.2e-28 127.9 102 67.6
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.2e-28 127.9 98 70.4
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 5.5e-28 127.5 97 69.1
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 5.5e-28 127.5 96 70.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 7.1e-28 127.1 95 70.5
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 7.1e-28 127.1 96 70.8
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 7.1e-28 127.1 95 69.5
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 7.1e-28 127.1 98 69.4
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 9.3e-28 126.7 93 71.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 9.3e-28 126.7 91 72.5
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 9.3e-28 126.7 93 71.0
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 9.3e-28 126.7 96 69.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 9.3e-28 126.7 96 69.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 9.3e-28 126.7 102 66.7
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 9.3e-28 126.7 93 69.9
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 9.3e-28 126.7 94 69.1
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 9.3e-28 126.7 99 68.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.2e-27 126.3 94 69.1
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.2e-27 126.3 100 71.0
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.6e-27 125.9 98 67.3
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.6e-27 125.9 91 71.4
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-27 125.9 93 69.9
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.1e-27 125.6 94 69.1
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.1e-27 125.6 94 69.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.7e-27 125.2 98 66.3
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.7e-27 125.2 96 68.8
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 3.5e-27 124.8 102 64.7
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.5e-27 124.8 91 71.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 3.5e-27 124.8 93 69.9
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.5e-27 124.8 100 70.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 6.0e-27 124.0 101 65.3
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 6.0e-27 124.0 100 67.0
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.0e-27 124.0 94 68.1
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 7.9e-27 123.6 97 66.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 7.9e-27 123.6 101 65.3
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.0e-26 123.2 94 69.1
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.0e-26 123.2 94 68.1
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.3e-26 122.9 91 67.0
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.3e-26 122.9 99 62.6
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.8e-26 122.5 93 68.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.8e-26 122.5 93 68.8
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-26 122.5 93 68.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 2.3e-26 122.1 93 68.8
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 3.0e-26 121.7 100 68.0
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 3.9e-26 121.3 99 66.7
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.9e-26 121.3 96 68.8
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.9e-26 121.3 100 69.0
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 6.7e-26 120.6 93 66.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 8.7e-26 120.2 94 67.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 8.7e-26 120.2 87 73.6
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 8.7e-26 120.2 95 66.3
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.7e-26 120.2 93 67.7
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.7e-26 120.2 93 67.7
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 8.7e-26 120.2 86 73.3
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-25 119.8 91 67.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.5e-25 119.4 93 66.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.5e-25 119.4 93 65.6
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.5e-25 119.4 91 67.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.5e-25 119.4 94 67.0
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.9e-25 119.0 93 66.7
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.9e-25 119.0 93 66.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.9e-25 119.0 90 68.9
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.9e-25 119.0 87 72.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.9e-25 119.0 95 65.3
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.5e-25 118.6 98 64.3
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.5e-25 118.6 98 64.3
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.5e-25 118.6 98 64.3
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.5e-25 118.6 98 64.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 4.3e-25 117.9 111 60.4
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 4.3e-25 117.9 93 66.7
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.6e-25 117.5 93 65.6
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 9.6e-25 116.7 94 64.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.1e-24 115.5 89 69.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.1e-24 115.5 94 64.9
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.2e-24 113.6 86 72.1
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.9e-21 105.1 90 60.0
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.9e-21 104.4 83 71.1
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 6.5e-21 104.0 82 67.1
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.4e-20 102.8 97 58.8
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.5e-20 100.9 58 84.5
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 7.1e-20 100.5 88 62.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.2e-19 99.8 76 72.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.2e-19 99.8 85 55.3
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.5e-19 98.2 74 74.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 4.6e-19 97.8 90 55.6
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.9e-19 97.1 77 70.1
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.0e-18 96.7 76 69.7
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.5e-17 92.8 94 51.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.5e-17 92.8 72 69.4
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 5.7e-17 90.9 92 50.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 7.4e-17 90.5 94 50.0
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-15 86.3 75 66.7
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.5e-14 82.8 55 72.7
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.7e-11 72.0 90 42.2
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.9e-10 68.2 85 40.0
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.3e-08 63.2 86 39.5
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.4e-07 59.7 90 32.2
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-07 59.3 103 40.8
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-06 56.6 38 76.3
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-06 56.6 38 76.3
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-06 56.6 38 76.3
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-06 56.6 38 76.3
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-06 56.6 38 76.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.4e-06 55.1 69 49.3


User provided reference genes

Program Settings