Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.6e-211 739.2 385 100.0
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.7e-91 340.5 309 62.8
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.6e-89 334.0 312 60.3
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.6e-89 334.0 316 59.8
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.0e-88 331.3 311 60.1
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.3e-88 330.1 314 60.8
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.6e-88 328.6 301 61.5
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.9e-87 327.0 312 57.7
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.5e-87 326.6 312 58.0
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.7e-86 322.4 311 58.5
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.0e-84 317.0 315 59.0
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 4.4e-84 315.8 311 57.9
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.7e-83 313.9 318 58.8
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.2e-83 313.5 317 59.6
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.2e-83 313.5 249 66.7
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.2e-83 313.5 252 66.7
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 3.8e-83 312.8 317 58.7
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 4.9e-83 312.4 187 80.7
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 4.9e-83 312.4 187 80.7
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 4.9e-83 312.4 311 57.2
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 8.4e-83 311.6 310 57.4
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.1e-82 311.2 318 58.5
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 9.2e-82 308.1 206 75.7
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 9.2e-82 308.1 302 57.6
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.2e-81 307.8 247 63.6
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.7e-81 306.6 301 57.1
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 2.7e-81 306.6 238 64.7
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 3.5e-81 306.2 186 79.0
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.5e-81 306.2 186 80.1
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.0e-80 304.7 274 62.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.3e-80 304.3 299 59.5
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.3e-80 304.3 240 64.2
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.3e-80 304.3 323 55.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.3e-80 303.5 248 63.3
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.3e-80 303.5 308 57.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 6.6e-80 302.0 307 57.0
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 6.6e-80 302.0 309 57.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 8.6e-80 301.6 187 77.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.1e-79 301.2 187 79.1
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.1e-79 301.2 310 56.8
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.5e-79 300.8 315 56.5
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.5e-79 300.8 199 73.9
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.6e-79 298.9 309 57.0
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 7.3e-79 298.5 187 75.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 9.6e-79 298.1 316 55.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 9.6e-79 298.1 314 54.1
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.2e-78 297.7 285 57.5
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.2e-78 297.7 310 56.5
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.7e-78 295.8 235 64.7
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 6.2e-78 295.4 193 73.1
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 6.2e-78 295.4 193 73.1
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 6.2e-78 295.4 191 76.4
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 8.1e-78 295.0 286 57.3
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.8e-77 293.9 308 55.5
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 3.1e-77 293.1 239 63.6
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 6.9e-77 292.0 188 73.9
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 9.0e-77 291.6 186 78.0
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.2e-76 291.2 188 73.9
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.5e-76 290.8 188 73.4
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.5e-76 290.8 188 73.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.4e-76 289.3 192 71.9
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 4.4e-76 289.3 285 59.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 9.9e-76 288.1 189 74.1
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.3e-75 287.7 199 68.3
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.2e-75 287.0 289 57.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.2e-75 287.0 254 61.4
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.2e-75 287.0 204 70.6
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.9e-75 286.6 188 72.9
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.9e-75 286.6 187 73.8
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 4.9e-75 285.8 243 61.3
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 6.4e-75 285.4 199 70.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 8.4e-75 285.0 188 74.5
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.4e-74 284.3 187 72.2
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.4e-74 284.3 216 67.1
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.9e-74 283.9 216 66.2
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.9e-74 283.9 206 67.5
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.4e-74 283.5 189 72.5
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.2e-74 282.7 304 52.3
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.4e-74 282.3 186 73.1
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 7.1e-74 282.0 290 55.2
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 9.3e-74 281.6 188 72.3
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.2e-73 281.2 308 55.2
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.1e-73 280.4 283 56.2
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.1e-73 280.4 188 72.3
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.6e-73 279.3 205 66.3
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 4.6e-73 279.3 189 73.0
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 6.0e-73 278.9 187 72.2
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.0e-72 278.1 247 60.3
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.0e-72 278.1 189 72.0
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.3e-72 277.7 205 68.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-72 275.8 284 56.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-72 275.8 284 56.0
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.1e-71 274.6 191 72.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-71 274.2 241 59.3
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 7.3e-71 271.9 210 67.6
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 7.3e-71 271.9 207 67.1
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.3e-70 271.2 188 72.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.1e-70 270.4 189 69.8
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.4e-69 267.7 237 61.2
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.4e-69 266.9 189 67.2
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.4e-69 266.9 223 62.8
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.2e-68 264.6 218 62.4
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 4.5e-68 262.7 190 69.5
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 3.8e-67 259.6 187 69.5
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.4e-67 258.8 259 56.4
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.1e-66 258.1 169 74.6
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.1e-66 258.1 186 68.3
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.1e-66 258.1 164 75.6
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 7.9e-65 251.9 234 57.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.6e-60 236.9 160 70.0
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 8.4e-59 231.9 187 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 4.2e-58 229.6 179 63.7
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 2.3e-56 223.8 186 59.7
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.3e-56 223.8 134 77.6
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.3e-55 219.9 133 78.2
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 5.6e-55 219.2 153 72.5
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 4.8e-54 216.1 139 73.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 2.4e-53 213.8 163 66.9
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 9.0e-53 211.8 174 58.6
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.5e-52 209.5 217 53.5
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-51 207.2 156 66.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.3e-47 193.0 156 64.1
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.5e-44 184.5 109 78.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.2e-42 176.8 110 74.5
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.1e-40 169.5 246 44.3
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 3.3e-39 166.8 93 84.9
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.1e-37 158.7 235 45.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 3.9e-32 143.3 92 68.5
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.5e-28 131.3 100 67.0
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 6.5e-27 125.9 102 60.8
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.1e-26 125.2 152 42.1
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.4e-26 124.8 114 62.3
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.4e-26 124.8 114 62.3
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.2e-25 121.7 135 44.4
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.1e-25 120.9 132 44.7
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 2.0e-23 114.4 83 69.9
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.5e-20 103.6 97 55.7
Eucgr.D01508 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.7e-19 101.3 75 78.7
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.5e-19 99.4 193 44.0
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.3e-14 85.1 111 46.8
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.0e-11 75.5 43 76.7
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.1e-10 72.0 105 49.5
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 2.1e-09 67.8 38 78.9
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-08 63.9 116 42.2
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.0e-08 63.9 56 60.7


User provided reference genes

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