Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01477 Eucalyptus grandis HOM05D002086 ORTHO05D004968 6.5e-79 297.4 154 100.0
Eucgr.C02665 Eucalyptus grandis HOM05D002086 ORTHO05D004968 1.1e-12 77.4 40 100.0
Eucgr.G00839 Eucalyptus grandis HOM05D002086 ORTHO05D194179 1.5e-11 73.6 55 78.2
Cfa013073 Carpinus fangiana HOM05D002086 ORTHO05D004968 2.2e-10 69.7 40 90.0
Haze_21431 Corylus avellana HOM05D002086 ORTHO05D004968 2.2e-10 69.7 40 90.0
FvH4_2g40980 Fragaria vesca HOM05D002086 ORTHO05D004968 2.9e-10 69.3 40 85.0
CiPaw.07G228900 Carya illinoinensis HOM05D002086 ORTHO05D004968 4.9e-10 68.6 40 87.5
Cpa.g.sc127.18 Carica papaya HOM05D002086 ORTHO05D004968 6.4e-10 68.2 42 81.0
Lsat_1_v5_gn_6_77701 Lactuca sativa HOM05D002086 ORTHO05D004968 6.4e-10 68.2 40 85.0
TAR383G0088 Trochodendron aralioides HOM05D002086 ORTHO05D004968 6.4e-10 68.2 40 87.5
Nn3g19137 Nelumbo nucifera HOM05D002086 ORTHO05D004968 8.4e-10 67.8 40 87.5
Nn8g39828 Nelumbo nucifera HOM05D002086 ORTHO05D004968 8.4e-10 67.8 40 87.5
Nn2g12323 Nelumbo nucifera HOM05D002086 ORTHO05D004968 1.4e-09 67.0 40 87.5
Phvul.009G088200 Phaseolus vulgaris HOM05D002086 ORTHO05D004968 1.4e-09 67.0 57 70.2
Dinv01596 Davidia involucrata HOM05D002086 ORTHO05D004968 2.4e-09 66.2 40 82.5
FAN20G1050 Fragaria x ananassa HOM05D002086 ORTHO05D004968 3.2e-09 65.9 40 82.5
FAN27G1068 Fragaria x ananassa HOM05D002086 ORTHO05D004968 3.2e-09 65.9 40 82.5
GSVIVG01035894001 Vitis vinifera HOM05D002086 ORTHO05D004968 3.2e-09 65.9 41 82.9
Glyma.04G062000 Glycine max HOM05D002086 ORTHO05D004968 4.2e-09 65.5 41 82.9
RcHm_v2.0_Chr6g0299591 Rosa chinensis HOM05D002086 ORTHO05D004968 7.1e-09 64.7 41 82.9
VMungo1309G1135 Vigna mungo HOM05D002086 ORTHO05D004968 9.3e-09 64.3 41 80.5
ClCG05G016420 Citrullus lanatus HOM05D002086 ORTHO05D004968 1.2e-08 63.9 41 80.5
MBI15_g10897_MAGBIO Magnolia biondii HOM05D002086 ORTHO05D004968 1.2e-08 63.9 40 82.5
MD08G1057900 Malus domestica HOM05D002086 ORTHO05D004968 1.2e-08 63.9 41 80.5
Dinv16456 Davidia involucrata HOM05D002086 ORTHO05D004968 1.6e-08 63.5 40 77.5
Sed0000579 Sechium edule HOM05D002086 ORTHO05D004968 1.6e-08 63.5 41 78.0
Ca_13056_v3 Cicer arietinum L. HOM05D002086 ORTHO05D004968 2.1e-08 63.2 40 80.0
ECA240G0466 Erigeron canadensis HOM05D002086 ORTHO05D004968 2.1e-08 63.2 47 72.3
Manes.03G010200 Manihot esculenta HOM05D002086 ORTHO05D004968 2.1e-08 63.2 41 73.2
Thecc.09G017200 Theobroma cacao HOM05D002086 ORTHO05D004968 2.1e-08 63.2 41 78.0
Actinidia14124 Actinidia chinensis HOM05D002086 ORTHO05D004968 2.7e-08 62.8 41 75.6
CSS0012509 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 2.7e-08 62.8 40 80.0
CSS0033639 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 2.7e-08 62.8 40 80.0
Dinv40991 Davidia involucrata HOM05D002086 ORTHO05D004968 2.7e-08 62.8 40 80.0
Duzib168G2069 Durio zibethinus HOM05D002086 ORTHO05D004968 2.7e-08 62.8 41 75.6
Lj8A736T34 Lonicera japonica HOM05D002086 ORTHO05D004968 2.7e-08 62.8 98 43.9
Atru.chr7.2533 Acer truncatum HOM05D002086 ORTHO05D004968 3.5e-08 62.4 41 75.6
arahy.Tifrunner.gnm1.ann1.L416IP Arachis hypogaea HOM05D002086 ORTHO05D004968 3.5e-08 62.4 40 82.5
arahy.Tifrunner.gnm1.ann1.MK6ALS Arachis hypogaea HOM05D002086 ORTHO05D004968 3.5e-08 62.4 40 82.5
PSO170G0198 Papaver somniferum HOM05D002086 ORTHO05D004968 3.5e-08 62.4 40 77.5
PGR044G1726 Punica granatum HOM05D002086 ORTHO05D004968 3.5e-08 62.4 40 75.0
AT4G31890 Arabidopsis thaliana HOM05D002086 ORTHO05D004968 4.6e-08 62.0 42 78.6
Carub.0007s0865 Capsella rubella HOM05D002086 ORTHO05D004968 4.6e-08 62.0 42 78.6
MELO3C016971.2 Cucumis melo HOM05D002086 ORTHO05D004968 4.6e-08 62.0 40 80.0
CsaV3_4G036680 Cucumis sativus L. HOM05D002086 ORTHO05D004968 4.6e-08 62.0 40 80.0
Thhalv10024943m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 4.6e-08 62.0 42 78.6
Lj5g0014488 Lotus japonicus HOM05D002086 ORTHO05D004968 4.6e-08 62.0 103 41.7
Manes.16G128100 Manihot esculenta HOM05D002086 ORTHO05D004968 4.6e-08 62.0 40 77.5
Medtr1g014420 Medicago truncatula HOM05D002086 ORTHO05D004968 4.6e-08 62.0 40 77.5
QL02p019575 Quercus lobata HOM05D002086 ORTHO05D004968 4.6e-08 62.0 42 81.0
Sp7g29710 Schrenkiella parvula HOM05D002086 ORTHO05D004968 4.6e-08 62.0 42 78.6
TPR.G3098 Trifolium pratense HOM05D002086 ORTHO05D004968 4.6e-08 62.0 41 80.5
Actinidia23099 Actinidia chinensis HOM05D002086 ORTHO05D004968 6.0e-08 61.6 41 75.6
PSO017G4449 Papaver somniferum HOM05D002086 ORTHO05D004968 6.0e-08 61.6 40 75.0
Psat6g027240 Pisum sativum HOM05D002086 ORTHO05D004968 6.0e-08 61.6 40 80.0
Prupe.1G392300 Prunus persica HOM05D002086 ORTHO05D004968 6.0e-08 61.6 41 75.6
DCAR_022852 Daucus carota HOM05D002086 ORTHO05D004968 7.9e-08 61.2 49 69.4
Duzib187G0822 Durio zibethinus HOM05D002086 ORTHO05D004968 7.9e-08 61.2 41 75.6
SpUn0318_0010 Schrenkiella parvula HOM05D002086 ORTHO05D004968 7.9e-08 61.2 42 76.2
TPR.G38917 Trifolium pratense HOM05D002086 ORTHO05D004968 7.9e-08 61.2 40 77.5
CARHR239820 Cardamine hirsuta HOM05D002086 ORTHO05D004968 1.3e-07 60.5 42 76.2
Thhalv10000153m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 1.3e-07 60.5 42 73.8
FAN15G3214 Fragaria x ananassa HOM05D002086 ORTHO05D004968 1.3e-07 60.5 34 85.3
Gohir.A05G058300 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.3e-07 60.5 42 71.4
Gohir.D05G060300 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.3e-07 60.5 41 75.6
Gorai.009G061400 Gossypium raimondii HOM05D002086 ORTHO05D004968 1.3e-07 60.5 41 75.6
MD15G1038300 Malus domestica HOM05D002086 ORTHO05D004968 1.3e-07 60.5 41 75.6
Aa31LG2G18200 Aethionema arabicum HOM05D002086 ORTHO05D004968 1.8e-07 60.1 42 76.2
HanXRQChr03g0084921 Helianthus annuus HOM05D002086 ORTHO05D004968 1.8e-07 60.1 47 68.1
Medtr3g106140 Medicago truncatula HOM05D002086 ORTHO05D004968 1.8e-07 60.1 41 78.0
Psat5g032080 Pisum sativum HOM05D002086 ORTHO05D004968 1.8e-07 60.1 41 75.6
AL4G16300 Arabidopsis lyrata HOM05D002086 ORTHO05D004968 2.3e-07 59.7 41 78.0
AL7G20050 Arabidopsis lyrata HOM05D002086 ORTHO05D004968 2.3e-07 59.7 42 76.2
arahy.Tifrunner.gnm1.ann1.1EF81S Arachis hypogaea HOM05D002086 ORTHO05D004968 2.3e-07 59.7 40 72.5
arahy.Tifrunner.gnm1.ann1.LJ933N Arachis hypogaea HOM05D002086 ORTHO05D004968 2.3e-07 59.7 103 39.8
BcaNung03121 Brassica carinata HOM05D002086 ORTHO05D004968 2.3e-07 59.7 42 73.8
A01p06360 Brassica napus HOM05D002086 ORTHO05D004968 2.3e-07 59.7 43 74.4
BraA01t00601Z Brassica rapa HOM05D002086 ORTHO05D004968 2.3e-07 59.7 43 74.4
Peaxi162Scf00632g00311 Petunia axillaris HOM05D002086 ORTHO05D004968 2.3e-07 59.7 41 70.7
CiPaw.08G006900 Carya illinoinensis HOM05D002086 ORTHO05D004968 3.0e-07 59.3 110 41.8
Glyma.06G063000 Glycine max HOM05D002086 ORTHO05D004968 3.0e-07 59.3 42 78.6
Rhsim02G0215800 Rhododendron simsii HOM05D002086 ORTHO05D004968 3.0e-07 59.3 41 68.3
CSS0031585 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 3.9e-07 58.9 47 66.0
Potri.006G263100 Populus trichocarpa HOM05D002086 ORTHO05D004968 3.9e-07 58.9 76 46.1
BcaC09g51980 Brassica carinata HOM05D002086 ORTHO05D004968 5.1e-07 58.5 43 74.4
C01p07010 Brassica napus HOM05D002086 ORTHO05D004968 5.1e-07 58.5 43 74.4
BolC1t00696H Brassica oleracea HOM05D002086 ORTHO05D004968 5.1e-07 58.5 43 74.4
Lsat_1_v5_gn_3_22020 Lactuca sativa HOM05D002086 ORTHO05D004968 5.1e-07 58.5 41 68.3
vmacro11259 Vaccinium macrocarpon HOM05D002086 ORTHO05D004968 5.1e-07 58.5 41 65.9
Ca_15769_v3 Cicer arietinum L. HOM05D002086 ORTHO05D004968 6.7e-07 58.2 41 70.7
Nitab4.5_0000486g0090 Nicotiana tabacum HOM05D002086 ORTHO05D004968 6.7e-07 58.2 41 68.3
Nitab4.5_0004637g0070 Nicotiana tabacum HOM05D002086 ORTHO05D004968 6.7e-07 58.2 41 68.3
Sabra06G0205300 Salix brachista HOM05D002086 ORTHO05D004968 6.7e-07 58.2 76 44.7
BcaC07g40889 Brassica carinata HOM05D002086 ORTHO05D004968 8.7e-07 57.8 53 60.4
BolC8t51457H Brassica oleracea HOM05D002086 ORTHO05D004968 8.7e-07 57.8 53 60.4
Ciclev10008009m.g Citrus clementina HOM05D002086 ORTHO05D004968 8.7e-07 57.8 41 73.2
Lalb_Chr22g0361391 Lupinus albus HOM05D002086 ORTHO05D004968 8.7e-07 57.8 40 72.5
BcaB08g35154 Brassica carinata HOM05D002086 ORTHO05D004968 1.1e-06 57.4 42 71.4
C08p38850 Brassica napus HOM05D002086 ORTHO05D004968 1.1e-06 57.4 53 60.4
TPR.G13089 Trifolium pratense HOM05D000659 ORTHO05D000505 1.1e-06 57.4 41 70.7
Aa31sc1102G10 Aethionema arabicum HOM05D002086 ORTHO05D004968 1.5e-06 57.0 42 71.4
Gohir.D06G103100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.5e-06 57.0 41 68.3
Gorai.010G118100 Gossypium raimondii HOM05D002086 ORTHO05D004968 1.5e-06 57.0 41 68.3
VMungo0647G1059 Vigna mungo HOM05D002086 ORTHO05D004968 1.9e-06 56.6 43 72.1
CAN.G651.6 Capsicum annuum HOM05D002086 ORTHO05D004968 2.5e-06 56.2 41 65.9
CDE05G1030 Ceratophyllum demersum HOM05D002086 ORTHO05D004968 3.3e-06 55.8 41 65.9
Gohir.A06G101100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 3.3e-06 55.8 41 63.4
MSTRG.11591 Avicennia marina HOM05D002086 ORTHO05D004968 4.3e-06 55.5 49 63.3
Rhsim07G0163800 Rhododendron simsii HOM05D002086 ORTHO05D004968 4.3e-06 55.5 41 61.0
Solyc08g042100.3 Solanum lycopersicum HOM05D002086 ORTHO05D004968 4.3e-06 55.5 41 68.3
Sopen08g012600 Solanum pennellii HOM05D002086 ORTHO05D004968 4.3e-06 55.5 41 68.3
PGSC0003DMG400000963 Solanum tuberosum HOM05D002086 ORTHO05D004968 4.3e-06 55.5 41 68.3
Lj1g0020641 Lotus japonicus HOM05D002086 ORTHO05D004968 5.6e-06 55.1 42 73.8
Sed0019085 Sechium edule HOM05D002086 ORTHO05D004968 5.6e-06 55.1 40 72.5
Lsat_1_v5_gn_6_114620 Lactuca sativa HOM05D000741 ORTHO05D000506 7.4e-06 54.7 39 71.8
Oeu000762.1 Olea europaea HOM05D002086 ORTHO05D004968 7.4e-06 54.7 43 67.4
Actinidia13192 Actinidia chinensis HOM05D002086 ORTHO05D004968 9.6e-06 54.3 40 67.5
AT2G25130 Arabidopsis thaliana HOM05D002086 ORTHO05D004968 9.6e-06 54.3 43 69.8
CsaV3_2G032440 Cucumis sativus L. HOM05D002086 ORTHO05D004968 9.6e-06 54.3 40 70.0
ECA246G0687 Erigeron canadensis HOM05D002086 ORTHO05D004968 9.6e-06 54.3 47 63.8
Hma1.2p1_0059F.1_g032590 Hydrangea macrophylla HOM05D002086 ORTHO05D004968 9.6e-06 54.3 41 70.7


User provided reference genes

Program Settings