Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.1e-78 296.6 146 100.0
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 4.1e-22 108.6 144 49.3
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.2e-21 107.1 146 50.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 2.1e-18 96.3 143 44.1
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 4.7e-18 95.1 144 45.1
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 8.0e-18 94.4 146 43.2
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.0e-18 94.4 145 42.1
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.0e-17 94.0 159 45.3
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.4e-17 93.6 144 43.8
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 3.0e-17 92.4 143 42.0
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.9e-17 92.0 144 43.8
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 5.2e-17 91.7 144 42.4
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 6.7e-17 91.3 148 45.9
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 6.7e-17 91.3 143 41.3
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 8.8e-17 90.9 144 45.8
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 2.6e-16 89.4 148 41.9
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 3.3e-16 89.0 153 45.1
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 5.7e-16 88.2 151 46.4
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.4e-16 87.8 159 41.5
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.7e-16 87.4 145 45.5
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 9.7e-16 87.4 141 44.7
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.7e-15 86.7 154 39.0
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.2e-15 86.3 159 40.9
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.8e-15 85.9 160 40.0
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 2.8e-15 85.9 142 38.7
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.8e-15 85.9 145 41.4
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 3.7e-15 85.5 153 39.9
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 4.8e-15 85.1 145 43.4
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 4.8e-15 85.1 149 41.6
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 6.3e-15 84.7 142 39.4
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 6.3e-15 84.7 145 40.7
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.8e-14 83.2 142 39.4
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.4e-14 82.8 157 41.4
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 3.1e-14 82.4 148 39.2
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 4.1e-14 82.0 142 42.3
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 4.1e-14 82.0 162 42.6
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.1e-14 80.9 159 40.3
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.2e-13 80.5 145 43.4
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 1.2e-13 80.5 148 40.5
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.6e-13 80.1 151 37.7
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.0e-13 79.7 143 42.7
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.6e-13 79.3 145 42.8
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.6e-13 79.3 144 38.9
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.5e-13 79.0 90 52.2
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 3.5e-13 79.0 153 37.9
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.0e-12 77.4 142 41.5
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.0e-12 77.4 142 41.5
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.3e-12 77.0 142 43.0
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.3e-12 77.0 149 36.9
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.3e-12 77.0 142 40.1
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 3.8e-12 75.5 143 39.2
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 3.8e-12 75.5 145 40.7
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.5e-12 74.7 141 41.1
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.5e-12 74.7 141 41.1
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 6.5e-12 74.7 142 40.8
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-11 73.9 144 39.6
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 1.9e-11 73.2 145 40.7
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.5e-11 72.8 150 41.3
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 3.2e-11 72.4 143 38.5
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 3.2e-11 72.4 144 36.8
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 4.2e-11 72.0 151 34.4
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 4.2e-11 72.0 145 38.6
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 7.2e-11 71.2 137 37.2
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 7.2e-11 71.2 142 38.7
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 9.4e-11 70.9 142 42.3
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 1.2e-10 70.5 168 38.7
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.6e-10 70.1 142 38.7
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.1e-10 69.7 142 39.4
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.1e-10 69.7 142 38.0
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 2.7e-10 69.3 158 38.6
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 3.6e-10 68.9 142 35.2
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.6e-10 68.9 149 40.3
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.7e-10 68.6 142 43.7
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.1e-10 68.2 144 36.1
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.0e-10 67.8 142 39.4
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 8.0e-10 67.8 142 39.4
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 8.0e-10 67.8 174 38.5
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 8.0e-10 67.8 145 38.6
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 1.0e-09 67.4 141 38.3
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.4e-09 67.0 142 37.3
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 3.0e-09 65.9 107 41.1
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 4.0e-09 65.5 144 36.1
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 4.0e-09 65.5 147 36.7
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 4.0e-09 65.5 144 38.2
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 5.2e-09 65.1 142 39.4
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 5.2e-09 65.1 142 35.2
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 5.2e-09 65.1 143 37.8
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 5.2e-09 65.1 143 37.8
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 6.7e-09 64.7 107 40.2
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.8e-09 64.3 145 37.9
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 8.8e-09 64.3 142 36.6
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.2e-08 63.9 161 36.6
A01p21100 Brassica napus HOM05D010379 ORTHO05D012419 2.0e-08 63.2 144 39.6
BraA01t02021Z Brassica rapa HOM05D010379 ORTHO05D012419 2.0e-08 63.2 144 39.6
Sc17g0007950 Simmondsia chinensis HOM05D004793 ORTHO05D004423 2.0e-08 63.2 149 36.9
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 2.6e-08 62.8 142 33.1
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 2.6e-08 62.8 142 31.0
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.3e-08 62.4 137 39.4
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 5.7e-08 61.6 142 38.0
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.7e-08 61.6 142 36.6
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.7e-08 61.6 144 35.4
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.7e-08 61.6 110 38.2
A03p49840 Brassica napus HOM05D010379 ORTHO05D012419 7.5e-08 61.2 142 40.1
BraA03t14079Z Brassica rapa HOM05D010379 ORTHO05D012419 7.5e-08 61.2 142 40.1
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.5e-08 61.2 139 36.0
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 7.5e-08 61.2 141 38.3
BcaC09g50349 Brassica carinata HOM05D010379 ORTHO05D012419 1.3e-07 60.5 144 38.9
BolC1t02584H Brassica oleracea HOM05D010379 ORTHO05D012419 1.3e-07 60.5 144 38.9
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 1.3e-07 60.5 142 38.7
C07p47900 Brassica napus HOM05D010379 ORTHO05D012419 1.7e-07 60.1 142 39.4
BolC7t45312H Brassica oleracea HOM05D010379 ORTHO05D012419 1.7e-07 60.1 142 39.4
BcaNung00193 Brassica carinata HOM05D010379 ORTHO05D012419 2.2e-07 59.7 144 38.2
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.2e-07 59.7 141 38.3
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 2.2e-07 59.7 161 34.8
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 2.2e-07 59.7 146 37.0
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 2.8e-07 59.3 152 34.9
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-07 59.3 146 35.6
ClCG01G021350 Citrullus lanatus HOM05D028401 ORTHO05D034761 3.7e-07 58.9 173 37.0
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.7e-07 58.9 146 32.9
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 4.8e-07 58.5 142 36.6
C01p26370 Brassica napus HOM05D010379 ORTHO05D012419 4.8e-07 58.5 144 38.2
BolC8t48370H Brassica oleracea HOM05D010379 ORTHO05D012419 6.3e-07 58.2 142 37.3
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.3e-07 58.2 146 32.9
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 6.3e-07 58.2 167 33.5
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 6.3e-07 58.2 143 34.3
Zm00001eb049820 Zea mays HOM05D004793 ORTHO05D004423 6.3e-07 58.2 133 36.8
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 8.2e-07 57.8 143 35.7
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.1e-06 57.4 144 31.2
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 1.1e-06 57.4 145 35.9
BcaC07g37989 Brassica carinata HOM05D010379 ORTHO05D012419 1.4e-06 57.0 137 38.7
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.8e-06 56.6 98 40.8
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 2.4e-06 56.2 140 36.4
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 3.1e-06 55.8 142 36.6
A08p12490 Brassica napus HOM05D010379 ORTHO05D012419 3.1e-06 55.8 142 37.3
BraA08t33240Z Brassica rapa HOM05D010379 ORTHO05D012419 3.1e-06 55.8 142 37.3
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 3.1e-06 55.8 146 35.6
Thhalv10026565m.g Eutrema salsugineum HOM05D010379 ORTHO05D012419 3.1e-06 55.8 146 37.0
Sp7g15000 Schrenkiella parvula HOM05D010379 ORTHO05D012419 3.1e-06 55.8 151 35.1
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 5.3e-06 55.1 138 36.2
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 5.3e-06 55.1 146 36.3
Sc05g0009740 Simmondsia chinensis HOM05D004793 ORTHO05D004423 7.0e-06 54.7 186 32.8
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 9.1e-06 54.3 146 36.3
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 9.1e-06 54.3 138 36.2
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 9.1e-06 54.3 93 40.9
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 9.1e-06 54.3 93 40.9


User provided reference genes

Program Settings